Ss1.1-Pig4-TMW8050C18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGCGGCGCCGGCCCCGAGCTTCCCCACGCCGGAGTACGGGCATGTGGGCCGTGGCGTC TTCAGCGACGTGTACGAGCCCGCGGAGGACACGTTTCTGCTGCTGGACGCTCTTGAGGCG GCGGCGGCCGAATTCTCAGGAGTGGAAATATGCCTTGAAGTAGGGTCAGGGTCTGGAGTG GTATCTGCGTTCCTAGCCTCTGTGATAGGTCCTCAGGCTTTGTACATGTGCACTGATGTC AACCCTGAGGCAGCAGCCTGTACCCTGGAAACAGCACGCTGTAACAAAGTCCACATTCAA CCAATAATTACAGATTTGGTCAAAGGCTTGCTACCAAGATTGAAGGAAAAAGTTGATCTT CTGGTGTTTAATCCCCCCTATGTAGTGACTCCATCTGAAGAGGTAGGGAGTCACGGGATA GAAGCAGCTTGGGCTGGTGGCAGAAATGGTCGTGAAGTAATGGACAGATTCTTTCCACTG GCTCCGGAGCTCCTTTCACCAAGAGGATTATTCTATTTAGTTACCATTAAAGAAAACAAT CCAGAAGAAATTTTGAAAACAATGAAGACAAAAGGTCTCCAAGGAACCACTGTACTTTCC AGGCAAGCAGGCCAAGAAATGCTTTCAGTCCTCAAGTTCACTAAGTCCTCATCTACAGTG TGCGCCACGTAAAGCTGAATGCATTCAGCATATTTTGAAACTGAAGTTATTTCTTGGTTA ACAAGTAAAATTGTCAGAAATTTGTCATATAGAAAAAGAAGAGTAGGGCATTTCCTTTTA CCATGGAATCAGGTCTACAGAAATATTTGCACAAATGCAGGTAAAAAATTTATATTTTAT ATATATATATTTATATATACATATATATTTATATATACATATGCAGTTTACATATATATA TGTGGAGTATGTATTATAAAAGTTGTATTTATATTATATATGAGAGGATGTTCATTTCAG CATTAGTTGTAATAGGAAAACAGTGAGGTAACCTAAATGTCCATCAGCAAAGGGGTTGGC AAAATAAATCACAGTATATTCATGTTATTGAACATGAGTGAATATCTAGCCATTATACAT GAGTCAGAGGGGGTCCCTTGTGATGCAGCAGATTAAGGATCCAGCACTGTCACTGGAGCA GCTCAAGTTGCTGCTGTGGCATGGGTTTGATCCCTGGCCCAGGAACTTCCATATGCCCCA GGGGCAGCCAAAAGATTAAAGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGCGGCGCCGGCCCCGAGCTTCCCCACGCCGGAGTACGGGCATGTGGGCCGTGGCGTC TTCAGCGACGTGTACGAGCCCGCGGAGGACACGTTTCTGCTGCTGGACGCTCTTGAGGCG GCGGCGGCCGAATTCTCAGGAGTGGAAATATGCCTTGAAGTAGGGTCAGGGTCTGGAGTG GTATCTGCGTTCCTAGCCTCTGTGATAGGTCCTCAGGCTTTGTACATGTGCACTGATGTC AACCCTGAGGCAGCAGCCTGTACCCTGGAAACAGCACGCTGTAACAAAGTCCACATTCAA CCAATAATTACAGATTTGGTCAAAGGCTTGCTACCAAGATTGAAGGAAAAAGTTGATCTT CTGGTGTTTAATCCCCCCTATGTAGTGACTCCATCTGAAGAGGTAGGGAGTCACGGGATA GAAGCAGCTTGGGCTGGTGGCAGAAATGGTCGTGAAGTAATGGACAGATTCTTTCCACTG GCTCCGGAGCTCCTTTCACCAAGAGGATTATTCTATTTAGTTACCATTAAAGAAAACAAT CCAGAAGAAATTTTGAAAACAATGAAGACAAAAGGTCTCCAAGGAACCACTGTACTTTCC AGGCAAGCAGGCCAAGAAATGCTTTCAGTCCTCAAGTTCACTAAGTCCTCATCTACAGTG TGCGCCACGTAAAGCTGAATGCATTCAGCATATTTTGAAACTGAAGTTATTTCTTGGTTA ACAAGTAAAATTGTCAGAAATTTGTCATATAGAAAAAGAAGAGTAGGGCATTTCCTTTTA CCATGGAATCAGGTCTACAGAAATATTTGCACAAATGCAGGTAAAAAATTTATATTTTAT ATATATATATTTATATATACATATATATTTATATATACATATGCAGTTTACATATATATA TGTGGAGTATGTATTATAAAAGTTGTATTTATATTATATATGAGAGGATGTTCATTTCAG CATTAGTTGTAATAGGAAAACAGTGAGGTAACCTAAATGTCCATCAGCAAAGGGGTTGGC AAAATAAATCACAGTATATTCATGTTATTGAACATGAGTGAATATCTAGCCATTATACAT GAGTCAGAGGGGGTCCCTTGTGATGCAGCAGATTAAGGATCCAGCACTGTCACTGGAGCA GCTCAAGTTGCTGCTGTGGCATGGGTTTGATCCCTGGCCCAGGAACTTCCATATGCCCCA GGGGCAGCCAAAAGATTAAAGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 969-1087, - strand, RNAz p=0.649123 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 969-1087, - strand, RNAz p=0.649123 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 178-374, gnl|bosTau2|chr7 (26696640-26696836) | |
| 178-374, gnl|Hg17|chr11 (92983092-92982843) | |
| 218-320, gnl|bosTau2|chr1 (6651653-6651551) | |
| 218-320, gnl|canFam2|chr31 (26917405-26917262) | |
| 218-320, gnl|dasNov1|scaffold_17942 (10855-10712) | |
| 218-320, gnl|echTel1|scaffold_157534 (2654-2515) | |
| 218-320, gnl|fr1|chrUn (36352564-36352450) | |
| 218-320, gnl|galGal2|chr1 (97706559-97706426) | |
| 218-320, gnl|hg17|chr21 (29176327-29176467) | |
| 218-320, gnl|Hg17|chr21 (29176453-29176351) | |
| 218-320, gnl|loxAfr1|scaffold_46519 (33995-33852) | |
| 218-320, gnl|mm7|chr16 (87398966-87398823) | |
| 218-320, gnl|Mm7|chr16 (87398836-87398938) | |
| 218-320, gnl|monDom2|scaffold_29 (6082555-6082698) | |
| 218-320, gnl|oryCun1|scaffold_191313 (6612-6751) | |
| 218-320, gnl|panTro1|chr22 (29193403-29193543) | |
| 218-320, gnl|rheMac2|chr3 (17788994-17788854) | |
| 218-320, gnl|rn3|chr11 (27110241-27110099) | |
| 218-320, gnl|xenTro1|scaffold_48 (2247377-2247221) | |
| 407-1087, gnl|bosTau2|chr7 (26696839-26697499) | |
| 543-912, gnl|bosTau2|chr1 (6642927-6642550) | |
| 543-912, gnl|canFam2|chr31 (26927932-26927736) | |
| 543-912, gnl|dasNov1|scaffold_11425 (6235-6440) | |
| 543-912, gnl|Hg17|chr21 (29170686-29170345) | |
| 543-912, gnl|hg17|chr6 (151693511-151693736) | |
| 543-912, gnl|loxAfr1|scaffold_60801 (34707-34924) | |
| 543-912, gnl|mm7|chr10 (6053842-6053686) | |
| 543-912, gnl|oryCun1|scaffold_202842 (53906-54127) | |
| 543-912, gnl|panTro1|chr5 (155199712-155199937) | |
| 543-912, gnl|rheMac2|chr4 (111814428-111814196) | |
| 543-912, gnl|rn3|chr1 (35007847-35007951) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 178-374, gnl|bosTau2|chr7 (26696640-26696836) | |
| 178-374, gnl|Hg17|chr11 (92983092-92982843) | |
| 218-320, gnl|bosTau2|chr1 (6651653-6651551) | |
| 218-320, gnl|canFam2|chr31 (26917405-26917262) | |
| 218-320, gnl|dasNov1|scaffold_17942 (10855-10712) | |
| 218-320, gnl|echTel1|scaffold_157534 (2654-2515) | |
| 218-320, gnl|fr1|chrUn (36352564-36352450) | |
| 218-320, gnl|galGal2|chr1 (97706559-97706426) | |
| 218-320, gnl|hg17|chr21 (29176327-29176467) | |
| 218-320, gnl|Hg17|chr21 (29176453-29176351) | |
| 218-320, gnl|loxAfr1|scaffold_46519 (33995-33852) | |
| 218-320, gnl|mm7|chr16 (87398966-87398823) | |
| 218-320, gnl|Mm7|chr16 (87398836-87398938) | |
| 218-320, gnl|monDom2|scaffold_29 (6082555-6082698) | |
| 218-320, gnl|oryCun1|scaffold_191313 (6612-6751) | |
| 218-320, gnl|panTro1|chr22 (29193403-29193543) | |
| 218-320, gnl|rheMac2|chr3 (17788994-17788854) | |
| 218-320, gnl|rn3|chr11 (27110241-27110099) | |
| 218-320, gnl|xenTro1|scaffold_48 (2247377-2247221) | |
| 407-1087, gnl|bosTau2|chr7 (26696839-26697499) | |
| 543-912, gnl|bosTau2|chr1 (6642927-6642550) | |
| 543-912, gnl|canFam2|chr31 (26927932-26927736) | |
| 543-912, gnl|dasNov1|scaffold_11425 (6235-6440) | |
| 543-912, gnl|Hg17|chr21 (29170686-29170345) | |
| 543-912, gnl|hg17|chr6 (151693511-151693736) | |
| 543-912, gnl|loxAfr1|scaffold_60801 (34707-34924) | |
| 543-912, gnl|mm7|chr10 (6053842-6053686) | |
| 543-912, gnl|oryCun1|scaffold_202842 (53906-54127) | |
| 543-912, gnl|panTro1|chr5 (155199712-155199937) | |
| 543-912, gnl|rheMac2|chr4 (111814428-111814196) | |
| 543-912, gnl|rn3|chr1 (35007847-35007951) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| gul (0.177588) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pgl (0.118483) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pgl (0.118483) |