Non-Coding RNA Search

Ss1.1-Pig4-TMW8050C21.5

Sequence:


               
               GGCGGGTGGAGGATCGAGCGCTGTTCTCGCTCTGGAGCCGCTGCACAGTTCGGAATCTTT
TGCAGCTTATCCATTGTGTGAGTAAAAAGTAAATCACATCCATAATTCCACTGAACTGGG
CACACAAAAACTGCCATATATGTCACAGTATACTGAAAAAGAGCCGGCAGCAATGGATCA
AGAATCCAGCAAGGCTGCCTGGCCCAAATCAGCAGGAGGATATCAGACAATCACAGGCAG
GAGATATGGCAGAAGACATGCATATGTCAGTTTTAAACCATGTATGACCAGGCATGAAAG
GAGCTTAGGTCGGGCTGGTGATGACTATGAAGTGTTGGAACTAGATGATGTTCCAAAAGA
AAATTCCTCAGGTTCCAGTCCATTGGATCAAGTTCATTCTTCGCCCATTGACCCTTTATT
TGAAAAAAGTGAAGCAGATATTCCCATTTGTGATACAGCATTGAATCAAAACGTTGAGAG
CAGTCCGTCCTTTGCTGCAGTACATCATAGCGAGGAAGGCAGGGAGACCTTAGGAAGCAG
TACAGATCTTCACAATCACGCTGAGGGAGATTATACTCCAGGAGCTTGTAATGCTTCAAG
TGTCCAAAATGGAATTACATTGGTTCATACTGACTCTTTTGATCCAGATGGCAGACATGG
AGAGGATAATGACCATCTTCAGCTTTCTGCAGAAGTTATGGAAGGTGATAGATACCAGGA
AGCACTGGGCAATTCAATATTTGAGTTGGAAAATGGAGAGGTAGAGGCATACACTGGTGT
TTCACCACCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGTGGAGGATCGAGCGCTGTTCTCGCTCTGGAGCCGCTGCACAGTTCGGAATCTTT
TGCAGCTTATCCATTGTGTGAGTAAAAAGTAAATCACATCCATAATTCCACTGAACTGGG
CACACAAAAACTGCCATATATGTCACAGTATACTGAAAAAGAGCCGGCAGCAATGGATCA
AGAATCCAGCAAGGCTGCCTGGCCCAAATCAGCAGGAGGATATCAGACAATCACAGGCAG
GAGATATGGCAGAAGACATGCATATGTCAGTTTTAAACCATGTATGACCAGGCATGAAAG
GAGCTTAGGTCGGGCTGGTGATGACTATGAAGTGTTGGAACTAGATGATGTTCCAAAAGA
AAATTCCTCAGGTTCCAGTCCATTGGATCAAGTTCATTCTTCGCCCATTGACCCTTTATT
TGAAAAAAGTGAAGCAGATATTCCCATTTGTGATACAGCATTGAATCAAAACGTTGAGAG
CAGTCCGTCCTTTGCTGCAGTACATCATAGCGAGGAAGGCAGGGAGACCTTAGGAAGCAG
TACAGATCTTCACAATCACGCTGAGGGAGATTATACTCCAGGAGCTTGTAATGCTTCAAG
TGTCCAAAATGGAATTACATTGGTTCATACTGACTCTTTTGATCCAGATGGCAGACATGG
AGAGGATAATGACCATCTTCAGCTTTCTGCAGAAGTTATGGAAGGTGATAGATACCAGGA
AGCACTGGGCAATTCAATATTTGAGTTGGAAAATGGAGAGGTAGAGGCATACACTGGTGT
TTCACCACCACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               248-367, + strand, RNAz p=0.804547

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-367, + strand, RNAz p=0.804547

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               168-373, gnl|bosTau2|chr7 (68399763-68399558)
               

               
               168-373, gnl|Hg17|chr5 (108745306-108745101)
               

               
               168-373, gnl|Mm7|chr17 (62522046-62521841)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-373, gnl|bosTau2|chr7 (68399763-68399558)
               

               
               168-373, gnl|Hg17|chr5 (108745306-108745101)
               

               
               168-373, gnl|Mm7|chr17 (62522046-62521841)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.142308)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	168-373, gnl\|bosTau2\|chr7 (68399763-68399558)
	168-373, gnl\|Hg17\|chr5 (108745306-108745101)
	168-373, gnl\|Mm7\|chr17 (62522046-62521841)