Ss1.1-Pig4-TMW8050D03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACTTCTGTCAGCGACAGTAACTTCTCTGAAGAGCCTTCTCGGAAAAACCCCACCCGCTG GTCGACCACCGCCGGCTTCCTCAAGCAAAACACGGCCGGCAACCCCACTGCGTGTGACAG GAAGAAAGATGAAAACTACAGAAGCCTCCCACGGGACACTAGTAACTGGTCTAACCAATT TCAGAGAGACAATGCTCGCTCATCTCTGAGTGCCAGTCACCCAATGGTGGACAAGTGGCT GGAGAAGCAAGAACAGGATGAGGATGGGACGGAGGAAGACAGCAGCCGTGTTGAACCCGT GGGACACGCCGACACTGGTGTGGAGAACGTACCCAACTTTTCTCTGGATGATATGGTAAA GCTCGTACAAGTCCCCAACGATGGAGGGCCTCTGGGAATCCATGTAGTGCCTTTCAGTGC TCGAGGCGGCAGAACCCTGGGGTTATTAGTAAAACGATTGGAGAAAGGTGGTAAAGCTGA GCAAGAAAACCTTTTTCATGAGAATGATTGCATTGTCAGGATTAATGATGGCGACCTTCG AAATAGAAGATTTGAACAAGCACAGCATATGTTTCGCCAAGCCATGCGTACATCTATCAT TTGGTTCCATGTGGTTCCCGCCGCAAATAAAGAGCAGTACGAACAACTCTCCCAGAGCGA GAGGAACAATTACTATTCGAGCCGCTTCAGCCCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACTTCTGTCAGCGACAGTAACTTCTCTGAAGAGCCTTCTCGGAAAAACCCCACCCGCTG GTCGACCACCGCCGGCTTCCTCAAGCAAAACACGGCCGGCAACCCCACTGCGTGTGACAG GAAGAAAGATGAAAACTACAGAAGCCTCCCACGGGACACTAGTAACTGGTCTAACCAATT TCAGAGAGACAATGCTCGCTCATCTCTGAGTGCCAGTCACCCAATGGTGGACAAGTGGCT GGAGAAGCAAGAACAGGATGAGGATGGGACGGAGGAAGACAGCAGCCGTGTTGAACCCGT GGGACACGCCGACACTGGTGTGGAGAACGTACCCAACTTTTCTCTGGATGATATGGTAAA GCTCGTACAAGTCCCCAACGATGGAGGGCCTCTGGGAATCCATGTAGTGCCTTTCAGTGC TCGAGGCGGCAGAACCCTGGGGTTATTAGTAAAACGATTGGAGAAAGGTGGTAAAGCTGA GCAAGAAAACCTTTTTCATGAGAATGATTGCATTGTCAGGATTAATGATGGCGACCTTCG AAATAGAAGATTTGAACAAGCACAGCATATGTTTCGCCAAGCCATGCGTACATCTATCAT TTGGTTCCATGTGGTTCCCGCCGCAAATAAAGAGCAGTACGAACAACTCTCCCAGAGCGA GAGGAACAATTACTATTCGAGCCGCTTCAGCCCCAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 1-124, gnl|bosTau2|chr13 (10341303-10341426) | |
| 1-124, gnl|canFam2|chr2 (5443787-5443692) | |
| 1-124, gnl|danRer3|chr24 (2123157-2123252) | |
| 1-124, gnl|dasNov1|scaffold_3388 (116939-116844) | |
| 1-124, gnl|echTel1|scaffold_321749 (102411-102316) | |
| 1-124, gnl|galGal2|chr2 (12653665-12653570) | |
| 1-124, gnl|hg17|chr10 (34799017-34799112) | |
| 1-124, gnl|Hg17|chr10 (34799145-34799019) | |
| 1-124, gnl|loxAfr1|scaffold_31845 (6250-6155) | |
| 1-124, gnl|mm7|chr8 (125914754-125914659) | |
| 1-124, gnl|Mm7|chr8 (125914624-125914750) | |
| 1-124, gnl|monDom2|scaffold_7 (33876718-33876623) | |
| 1-124, gnl|oryCun1|scaffold_167334 (7397-7486) | |
| 1-124, gnl|panTro1|chr8 (35223399-35223494) | |
| 1-124, gnl|rheMac2|chr9 (34655111-34655206) | |
| 1-124, gnl|rn3|chr19 (57279902-57279807) | |
| 1-124, gnl|xenTro1|scaffold_137 (1506253-1506158) | |
| 430-558, gnl|bosTau2|chr12 (29615125-29615253) | |
| 430-558, gnl|canFam2|chr2 (5531297-5531143) | |
| 430-558, gnl|danRer3|chr2 (38362768-38362621) | |
| 430-558, gnl|dasNov1|scaffold_419 (119263-119416) | |
| 430-558, gnl|echTel1|scaffold_321749 (193529-193375) | |
| 430-558, gnl|fr1|chrUn (307593276-307593132) | |
| 430-558, gnl|galGal2|chr2 (12709702-12709548) | |
| 430-558, gnl|hg17|chr10 (34713049-34713203) | |
| 430-558, gnl|Hg17|chr10 (34713191-34713063) | |
| 430-558, gnl|loxAfr1|scaffold_65439 (30059-30213) | |
| 430-558, gnl|mm7|chr8 (125978631-125978477) | |
| 430-558, gnl|Mm7|chr8 (125978487-125978615) | |
| 430-558, gnl|monDom2|scaffold_7 (33967284-33967130) | |
| 430-558, gnl|oryCun1|scaffold_206239 (174193-174347) | |
| 430-558, gnl|panTro1|chr8 (35137075-35137242) | |
| 430-558, gnl|rheMac2|chr9 (34569701-34569855) | |
| 430-558, gnl|rn3|chr19 (57342154-57342000) | |
| 430-558, gnl|tetNig1|chr15 (1170725-1170589) | |
| 430-558, gnl|xenTro1|scaffold_137 (1537229-1537076) | |
| 559-694, gnl|bosTau2|chr12 (29616243-29616378) | |
| 559-694, gnl|canFam2|chr2 (5532523-5532365) | |
| 559-694, gnl|danRer3|chr2 (38365812-38365659) | |
| 559-694, gnl|dasNov1|scaffold_419 (117828-117986) | |
| 559-694, gnl|echTel1|scaffold_321749 (195131-194992) | |
| 559-694, gnl|fr1|chrUn (110453589-110453787) | |
| 559-694, gnl|galGal2|chr2 (12711054-12710896) | |
| 559-694, gnl|hg17|chr10 (34711719-34711877) | |
| 559-694, gnl|Hg17|chr10 (34711856-34711721) | |
| 559-694, gnl|mm7|chr8 (125979877-125979719) | |
| 559-694, gnl|Mm7|chr8 (125979738-125979873) | |
| 559-694, gnl|monDom2|scaffold_7 (33968673-33968516) | |
| 559-694, gnl|oryCun1|scaffold_206239 (172492-172648) | |
| 559-694, gnl|panTro1|chr8 (35135733-35135891) | |
| 559-694, gnl|rheMac2|chr9 (34568423-34568581) | |
| 559-694, gnl|rn3|chr19 (57343460-57343302) | |
| 559-694, gnl|tetNig1|chr15 (1171713-1171566) | |
| 559-694, gnl|xenTro1|scaffold_137 (1541296-1541135) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-124, gnl|bosTau2|chr13 (10341303-10341426) | |
| 1-124, gnl|canFam2|chr2 (5443787-5443692) | |
| 1-124, gnl|danRer3|chr24 (2123157-2123252) | |
| 1-124, gnl|dasNov1|scaffold_3388 (116939-116844) | |
| 1-124, gnl|echTel1|scaffold_321749 (102411-102316) | |
| 1-124, gnl|galGal2|chr2 (12653665-12653570) | |
| 1-124, gnl|hg17|chr10 (34799017-34799112) | |
| 1-124, gnl|Hg17|chr10 (34799145-34799019) | |
| 1-124, gnl|loxAfr1|scaffold_31845 (6250-6155) | |
| 1-124, gnl|mm7|chr8 (125914754-125914659) | |
| 1-124, gnl|Mm7|chr8 (125914624-125914750) | |
| 1-124, gnl|monDom2|scaffold_7 (33876718-33876623) | |
| 1-124, gnl|oryCun1|scaffold_167334 (7397-7486) | |
| 1-124, gnl|panTro1|chr8 (35223399-35223494) | |
| 1-124, gnl|rheMac2|chr9 (34655111-34655206) | |
| 1-124, gnl|rn3|chr19 (57279902-57279807) | |
| 1-124, gnl|xenTro1|scaffold_137 (1506253-1506158) | |
| 430-558, gnl|bosTau2|chr12 (29615125-29615253) | |
| 430-558, gnl|canFam2|chr2 (5531297-5531143) | |
| 430-558, gnl|danRer3|chr2 (38362768-38362621) | |
| 430-558, gnl|dasNov1|scaffold_419 (119263-119416) | |
| 430-558, gnl|echTel1|scaffold_321749 (193529-193375) | |
| 430-558, gnl|fr1|chrUn (307593276-307593132) | |
| 430-558, gnl|galGal2|chr2 (12709702-12709548) | |
| 430-558, gnl|hg17|chr10 (34713049-34713203) | |
| 430-558, gnl|Hg17|chr10 (34713191-34713063) | |
| 430-558, gnl|loxAfr1|scaffold_65439 (30059-30213) | |
| 430-558, gnl|mm7|chr8 (125978631-125978477) | |
| 430-558, gnl|Mm7|chr8 (125978487-125978615) | |
| 430-558, gnl|monDom2|scaffold_7 (33967284-33967130) | |
| 430-558, gnl|oryCun1|scaffold_206239 (174193-174347) | |
| 430-558, gnl|panTro1|chr8 (35137075-35137242) | |
| 430-558, gnl|rheMac2|chr9 (34569701-34569855) | |
| 430-558, gnl|rn3|chr19 (57342154-57342000) | |
| 430-558, gnl|tetNig1|chr15 (1170725-1170589) | |
| 430-558, gnl|xenTro1|scaffold_137 (1537229-1537076) | |
| 559-694, gnl|bosTau2|chr12 (29616243-29616378) | |
| 559-694, gnl|canFam2|chr2 (5532523-5532365) | |
| 559-694, gnl|danRer3|chr2 (38365812-38365659) | |
| 559-694, gnl|dasNov1|scaffold_419 (117828-117986) | |
| 559-694, gnl|echTel1|scaffold_321749 (195131-194992) | |
| 559-694, gnl|fr1|chrUn (110453589-110453787) | |
| 559-694, gnl|galGal2|chr2 (12711054-12710896) | |
| 559-694, gnl|hg17|chr10 (34711719-34711877) | |
| 559-694, gnl|Hg17|chr10 (34711856-34711721) | |
| 559-694, gnl|mm7|chr8 (125979877-125979719) | |
| 559-694, gnl|Mm7|chr8 (125979738-125979873) | |
| 559-694, gnl|monDom2|scaffold_7 (33968673-33968516) | |
| 559-694, gnl|oryCun1|scaffold_206239 (172492-172648) | |
| 559-694, gnl|panTro1|chr8 (35135733-35135891) | |
| 559-694, gnl|rheMac2|chr9 (34568423-34568581) | |
| 559-694, gnl|rn3|chr19 (57343460-57343302) | |
| 559-694, gnl|tetNig1|chr15 (1171713-1171566) | |
| 559-694, gnl|xenTro1|scaffold_137 (1541296-1541135) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |