Ss1.1-Pig4-TMW8050D05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGAAAGAGCTAAAGCAAGTGGCCTCTCCTTTCACCCTGGTCATTGATGATCCTTCAGG GAACAGCTTTGTGGAAAACCCACACGCTCCCCAGAAAGATGAATCCCTGGAGATCACACG CTATAGTCGGACTCTACAGCAGGAAGAGATGCTGGGCCTCCGGGCAGGGGCACCAGAAGA GAAGCCAGAAGAGGAGGATTTCAGAAAGGAAGTGCTGCAGTTCAACACTAACTGCCCGGA ATGCAATGCCCCGGCCCAGACCAACATGAAGCTAGTTCAAATCCCCCACTTTAAGGAGGT TATCATCATGGCTACCAACTGCGAGAATTGTGGCCATCGGACCAATGAGGTGAAATCTGG AGGAGCCATAGAGCCCTTGGGCACCAGGATCACCTTCCACATCACAGATCCCTCAGATAT GACCAGAGACCTGCTCAAGTCTGAGACATGTAGTGTGGAAATTCCAGAGCTGGAATTTGA ACTGGGAATGGCTGTCCTTGGGGGCAAGTTCACCACACTGGAGGGGATGCTGAACGACAT CCGGGAACTGGTGACCAAGAACCCTTTCACACTGGGTGACAGTTCTAATCCCGGCCAGGC GGCAAAACTGCAGGAGTTTAGCCAGAAGTTGGATCAGATCCTTGAGGGTAACATGAAGGC CCACTTTATTATGGACGATCCAGCAGGAAACAGCTATTTGCAGAATGTGTATGCACCTGA AGATGATCCTGAGATGAAGGTAGAGCAGTATAAGCGCACATTTGACCAAAACGAGGAGCT GGGGCTCAACGACATGAAGACAGAAGGCTATGAGACAGGCCTGGCTGCCCAGCGGTAGCA GTGGGTAGTTCCTGGCCAGTCTCCAACATGGCTCAGACTGTGGGGTTATTTATTGCTGTT GGAAAAAGCAGGAGTGTCTCCCCACCAGGCCCTGCTCAAGTTGGGAGGGTACATGGTCTG AGTTGGAGATCAGGGCAGGCTTTCTGAACAGTTTGTGACAGAAACGCAAGCCTCTTAGGT TACTTGACCTTATTTTGGAGGCTTTGAATTGGCTTGGCAGAAACCAGGAAATGAATCATC AGACATGTCATTGTCACTTCTACCGGATCAAGTCTTTCTCCTTCCTCCAGCATTGCTCTC TCACCTAGGGTTGGAAGTCTGAAGCTGGAGAAGGTGGAAGACAGCTGCATCTGGAGTTTA GGAGTTGGTTTGGGGTATCAAAATGCTGACTTTCAACAGGAAAAGTCTCCTGAGGGAGGG GGTCAGGCCCAGGTGAAGAAGTTCTCATTAAAATGGTGGCTTTCAAACGGCAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGAAAGAGCTAAAGCAAGTGGCCTCTCCTTTCACCCTGGTCATTGATGATCCTTCAGG GAACAGCTTTGTGGAAAACCCACACGCTCCCCAGAAAGATGAATCCCTGGAGATCACACG CTATAGTCGGACTCTACAGCAGGAAGAGATGCTGGGCCTCCGGGCAGGGGCACCAGAAGA GAAGCCAGAAGAGGAGGATTTCAGAAAGGAAGTGCTGCAGTTCAACACTAACTGCCCGGA ATGCAATGCCCCGGCCCAGACCAACATGAAGCTAGTTCAAATCCCCCACTTTAAGGAGGT TATCATCATGGCTACCAACTGCGAGAATTGTGGCCATCGGACCAATGAGGTGAAATCTGG AGGAGCCATAGAGCCCTTGGGCACCAGGATCACCTTCCACATCACAGATCCCTCAGATAT GACCAGAGACCTGCTCAAGTCTGAGACATGTAGTGTGGAAATTCCAGAGCTGGAATTTGA ACTGGGAATGGCTGTCCTTGGGGGCAAGTTCACCACACTGGAGGGGATGCTGAACGACAT CCGGGAACTGGTGACCAAGAACCCTTTCACACTGGGTGACAGTTCTAATCCCGGCCAGGC GGCAAAACTGCAGGAGTTTAGCCAGAAGTTGGATCAGATCCTTGAGGGTAACATGAAGGC CCACTTTATTATGGACGATCCAGCAGGAAACAGCTATTTGCAGAATGTGTATGCACCTGA AGATGATCCTGAGATGAAGGTAGAGCAGTATAAGCGCACATTTGACCAAAACGAGGAGCT GGGGCTCAACGACATGAAGACAGAAGGCTATGAGACAGGCCTGGCTGCCCAGCGGTAGCA GTGGGTAGTTCCTGGCCAGTCTCCAACATGGCTCAGACTGTGGGGTTATTTATTGCTGTT GGAAAAAGCAGGAGTGTCTCCCCACCAGGCCCTGCTCAAGTTGGGAGGGTACATGGTCTG AGTTGGAGATCAGGGCAGGCTTTCTGAACAGTTTGTGACAGAAACGCAAGCCTCTTAGGT TACTTGACCTTATTTTGGAGGCTTTGAATTGGCTTGGCAGAAACCAGGAAATGAATCATC AGACATGTCATTGTCACTTCTACCGGATCAAGTCTTTCTCCTTCCTCCAGCATTGCTCTC TCACCTAGGGTTGGAAGTCTGAAGCTGGAGAAGGTGGAAGACAGCTGCATCTGGAGTTTA GGAGTTGGTTTGGGGTATCAAAATGCTGACTTTCAACAGGAAAAGTCTCCTGAGGGAGGG GGTCAGGCCCAGGTGAAGAAGTTCTCATTAAAATGGTGGCTTTCAAACGGCAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 42-160, - strand, RNAz p=0.763025 | |
| 438-554, + strand, RNAz p=0.703927 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-160, - strand, RNAz p=0.763025 | |
| 438-554, + strand, RNAz p=0.703927 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 42-184, gnl|bosTau2|chr15 (13272519-13272663) | |
| 42-184, gnl|canFam2|chr5 (19786649-19786526) | |
| 42-184, gnl|danRer3|chr10 (25462078-25461955) | |
| 42-184, gnl|dasNov1|scaffold_248491 (1705-1582) | |
| 42-184, gnl|echTel1|scaffold_211878 (808-652) | |
| 42-184, gnl|fr1|chrUn (272753057-272752933) | |
| 42-184, gnl|Hg17|chr11 (116161561-116161415) | |
| 42-184, gnl|hg17|chr6 (109214246-109214370) | |
| 42-184, gnl|loxAfr1|scaffold_11681 (2733-2610) | |
| 42-184, gnl|mm7|chr9 (46233981-46233858) | |
| 42-184, gnl|Mm7|chr9 (46233859-46234005) | |
| 42-184, gnl|monDom2|scaffold_0 (150461114-150461238) | |
| 42-184, gnl|oryCun1|scaffold_212242 (41548-41438) | |
| 42-184, gnl|panTro1|chr5 (111522329-111522453) | |
| 42-184, gnl|rheMac2|chr4 (155108277-155108153) | |
| 42-184, gnl|rn3|chr8 (49271728-49271606) | |
| 42-184, gnl|tetNig1|chrUn_random (17858127-17858252) | |
| 438-554, gnl|bosTau2|chr15 (13274882-13274998) | |
| 438-554, gnl|canFam2|chr5 (19789198-19789070) | |
| 438-554, gnl|canFam2|chr5 (19789197-19789083) | |
| 438-554, gnl|danRer3|chr10 (25466247-25466124) | |
| 438-554, gnl|danRer3|chr10 (25466246-25466132) | |
| 438-554, gnl|dasNov1|scaffold_158412 (893-766) | |
| 438-554, gnl|dasNov1|scaffold_158412 (893-779) | |
| 438-554, gnl|echTel1|scaffold_211878 (1198-1084) | |
| 438-554, gnl|echTel1|scaffold_287382 (3498-3627) | |
| 438-554, gnl|fr1|chrUn (272753452-272753349) | |
| 438-554, gnl|fr1|chrUn (272753465-272753351) | |
| 438-554, gnl|galGal2|chr24_random (114876-114998) | |
| 438-554, gnl|hg17|chr11 (116158841-116158969) | |
| 438-554, gnl|Hg17|chr11 (116158957-116158841) | |
| 438-554, gnl|hg17|chr6 (109213870-109213983) | |
| 438-554, gnl|loxAfr1|scaffold_11681 (5248-5120) | |
| 438-554, gnl|loxAfr1|scaffold_11681 (5247-5133) | |
| 438-554, gnl|mm7|chr9 (46236546-46236419) | |
| 438-554, gnl|mm7|chr9 (46236545-46236432) | |
| 438-554, gnl|Mm7|chr9 (46236429-46236545) | |
| 438-554, gnl|monDom2|scaffold_0 (150460718-150460832) | |
| 438-554, gnl|monDom2|scaffold_2 (122559626-122559498) | |
| 438-554, gnl|oryCun1|scaffold_212242 (41920-41807) | |
| 438-554, gnl|oryCun1|scaffold_212242 (41920-41807) | |
| 438-554, gnl|panTro1|chr5 (111521953-111522066) | |
| 438-554, gnl|panTro1|chr9 (118158557-118158685) | |
| 438-554, gnl|rheMac2|chr14 (115180288-115180416) | |
| 438-554, gnl|rheMac2|chr4 (155108665-155108552) | |
| 438-554, gnl|rn3|chr8 (49274417-49274295) | |
| 438-554, gnl|rn3|chr8 (49274416-49274303) | |
| 438-554, gnl|tetNig1|chrUn_random (17857708-17857821) | |
| 438-554, gnl|tetNig1|chrUn_random (17857707-17857821) | |
| 438-554, gnl|xenTro1|scaffold_18 (1541031-1540903) | |
| 698-1300, gnl|bosTau2|chr15 (13278250-13278848) | |
| 698-1300, gnl|Hg17|chr11 (116154991-116154365) | |
| 698-1300, gnl|Mm7|chr9 (46239159-46239730) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-184, gnl|bosTau2|chr15 (13272519-13272663) | |
| 42-184, gnl|canFam2|chr5 (19786649-19786526) | |
| 42-184, gnl|danRer3|chr10 (25462078-25461955) | |
| 42-184, gnl|dasNov1|scaffold_248491 (1705-1582) | |
| 42-184, gnl|echTel1|scaffold_211878 (808-652) | |
| 42-184, gnl|fr1|chrUn (272753057-272752933) | |
| 42-184, gnl|Hg17|chr11 (116161561-116161415) | |
| 42-184, gnl|hg17|chr6 (109214246-109214370) | |
| 42-184, gnl|loxAfr1|scaffold_11681 (2733-2610) | |
| 42-184, gnl|mm7|chr9 (46233981-46233858) | |
| 42-184, gnl|Mm7|chr9 (46233859-46234005) | |
| 42-184, gnl|monDom2|scaffold_0 (150461114-150461238) | |
| 42-184, gnl|oryCun1|scaffold_212242 (41548-41438) | |
| 42-184, gnl|panTro1|chr5 (111522329-111522453) | |
| 42-184, gnl|rheMac2|chr4 (155108277-155108153) | |
| 42-184, gnl|rn3|chr8 (49271728-49271606) | |
| 42-184, gnl|tetNig1|chrUn_random (17858127-17858252) | |
| 438-554, gnl|bosTau2|chr15 (13274882-13274998) | |
| 438-554, gnl|canFam2|chr5 (19789198-19789070) | |
| 438-554, gnl|canFam2|chr5 (19789197-19789083) | |
| 438-554, gnl|danRer3|chr10 (25466247-25466124) | |
| 438-554, gnl|danRer3|chr10 (25466246-25466132) | |
| 438-554, gnl|dasNov1|scaffold_158412 (893-766) | |
| 438-554, gnl|dasNov1|scaffold_158412 (893-779) | |
| 438-554, gnl|echTel1|scaffold_211878 (1198-1084) | |
| 438-554, gnl|echTel1|scaffold_287382 (3498-3627) | |
| 438-554, gnl|fr1|chrUn (272753452-272753349) | |
| 438-554, gnl|fr1|chrUn (272753465-272753351) | |
| 438-554, gnl|galGal2|chr24_random (114876-114998) | |
| 438-554, gnl|hg17|chr11 (116158841-116158969) | |
| 438-554, gnl|Hg17|chr11 (116158957-116158841) | |
| 438-554, gnl|hg17|chr6 (109213870-109213983) | |
| 438-554, gnl|loxAfr1|scaffold_11681 (5248-5120) | |
| 438-554, gnl|loxAfr1|scaffold_11681 (5247-5133) | |
| 438-554, gnl|mm7|chr9 (46236546-46236419) | |
| 438-554, gnl|mm7|chr9 (46236545-46236432) | |
| 438-554, gnl|Mm7|chr9 (46236429-46236545) | |
| 438-554, gnl|monDom2|scaffold_0 (150460718-150460832) | |
| 438-554, gnl|monDom2|scaffold_2 (122559626-122559498) | |
| 438-554, gnl|oryCun1|scaffold_212242 (41920-41807) | |
| 438-554, gnl|oryCun1|scaffold_212242 (41920-41807) | |
| 438-554, gnl|panTro1|chr5 (111521953-111522066) | |
| 438-554, gnl|panTro1|chr9 (118158557-118158685) | |
| 438-554, gnl|rheMac2|chr14 (115180288-115180416) | |
| 438-554, gnl|rheMac2|chr4 (155108665-155108552) | |
| 438-554, gnl|rn3|chr8 (49274417-49274295) | |
| 438-554, gnl|rn3|chr8 (49274416-49274303) | |
| 438-554, gnl|tetNig1|chrUn_random (17857708-17857821) | |
| 438-554, gnl|tetNig1|chrUn_random (17857707-17857821) | |
| 438-554, gnl|xenTro1|scaffold_18 (1541031-1540903) | |
| 698-1300, gnl|bosTau2|chr15 (13278250-13278848) | |
| 698-1300, gnl|Hg17|chr11 (116154991-116154365) | |
| 698-1300, gnl|Mm7|chr9 (46239159-46239730) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| che (0.272628) | |
| eje (0.197668) | |
| mcp (0.170648) | |
| fat (0.147427) | |
| cst (0.140036) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ecc (0.115035) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| che (0.272628) | |
| eje (0.197668) | |
| mcp (0.170648) | |
| fat (0.147427) | |
| cst (0.140036) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ecc (0.115035) |