Non-Coding RNA Search

Ss1.1-Pig4-TMW8050D08.5

Sequence:


               
               GGGAGTGACACTCAGCTGACAACGCGTGAGGTTGGAGCTTTCCCCAGGGGCTCGTTCCCC
TGGGTGCGGGGTGGGGGCTGGAGGTGTCCACGGAAAGGCAGGCTGGGTGCTGGGTGCGGG
TTGGCACGCGGTCTCTGTCACTGTGCCCGGATGAGTGACGAGCAAGCGCCCCCTGAGGAC
CTGGGTCTCTTGGAGAAGCAGTGAGACCTGGTCCTTCTGACCAGAACCCATCCTTCCCAG
GCATCACCCCCGCACCAGAGCTCCTCTTTCTCCAAGGGGTCAGCCTGGGTAGAGTCCAAA
GGGCAGGAAAGGAGTAGAACAAAGTGGGTTCTGCAGGCTCCTGGTGGAGGCCCTTTCCTA
TAGAGCACGCTCTGTGCCCCTGAGGCTTCAAACCGCTGGATTGCTATGGACCCTGTTCCC
ACTCAGATTATCCTCAGTTTAAGATACTTCGTAATTCTTTCATTTGTGTAGCGTGGGGTC
CTATGTCATCATCGTGCTTGTAAGAGAAAAAGGGTCATTTTATTCTCTGTATAAAAACAT
AGCTGTATAAAACTTAGCTCTCATGCAGAAATCAAAGACGCAAATGCAAGAAGGATGTTT
CGGCGTCCTCAGGACTCAGCAGCTCGCTCTCCAGAAGGGAGCGCACTATTTGTTCTGCTG
CTGTTGTCGTGAACTCTAATGACAGTGGAAGTCACAAAAATGTCCCTCGCCCCGCTCCCT
TGAACTCCCCGCAGACTGTGCGTGTATTCCTGTCTCGTGCCGTCGTCGTTGCAAACGTGG
TGTGTGCTAGTTCCCCGAGGCCCCCCACTTCCCTTTTAGAATATGCCCCCCCGACCCCGC
CGCCCGCCCCGTTAGATGCATCGTGGCGTTCTCTTCTCAAGGCTTTGAAATCTCCCCTCT
GCACTCAGATTAGTTTTCAGGTCTGTCTCCCTTCTTTCCCCCCCCCCCCCACTCCGACGA
GATCTTATTTCCTTCGGACAGACTGTAGGTACCTGCCTTGGTTTGTTTCTTCCCGTTCAC
TGCTTGTTTTGTCCCTCCCGGATCCTCGACCAAACAAACGATGCTCATGCTTCAGGACCT
TGTGTGACCAACACGTCAGTTTTCCTTTCTCTGTTATTTATATAAAAATAATTTATCAAA
AGGATATTTTAAAAAAAAAAAAGCTAGTCTGTCTTGAAACTTGTTTACCTTGAAAATTAT
CAGAATCTCAGTGTTTGGAAGTATTGAAGCACAAACTGTATCATCTCTGTACCGTTCTGT
ACTAAAGCACTCGAGTCTAATAAATAAATAAATCAGCGCCCAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGTGACACTCAGCTGACAACGCGTGAGGTTGGAGCTTTCCCCAGGGGCTCGTTCCCC
TGGGTGCGGGGTGGGGGCTGGAGGTGTCCACGGAAAGGCAGGCTGGGTGCTGGGTGCGGG
TTGGCACGCGGTCTCTGTCACTGTGCCCGGATGAGTGACGAGCAAGCGCCCCCTGAGGAC
CTGGGTCTCTTGGAGAAGCAGTGAGACCTGGTCCTTCTGACCAGAACCCATCCTTCCCAG
GCATCACCCCCGCACCAGAGCTCCTCTTTCTCCAAGGGGTCAGCCTGGGTAGAGTCCAAA
GGGCAGGAAAGGAGTAGAACAAAGTGGGTTCTGCAGGCTCCTGGTGGAGGCCCTTTCCTA
TAGAGCACGCTCTGTGCCCCTGAGGCTTCAAACCGCTGGATTGCTATGGACCCTGTTCCC
ACTCAGATTATCCTCAGTTTAAGATACTTCGTAATTCTTTCATTTGTGTAGCGTGGGGTC
CTATGTCATCATCGTGCTTGTAAGAGAAAAAGGGTCATTTTATTCTCTGTATAAAAACAT
AGCTGTATAAAACTTAGCTCTCATGCAGAAATCAAAGACGCAAATGCAAGAAGGATGTTT
CGGCGTCCTCAGGACTCAGCAGCTCGCTCTCCAGAAGGGAGCGCACTATTTGTTCTGCTG
CTGTTGTCGTGAACTCTAATGACAGTGGAAGTCACAAAAATGTCCCTCGCCCCGCTCCCT
TGAACTCCCCGCAGACTGTGCGTGTATTCCTGTCTCGTGCCGTCGTCGTTGCAAACGTGG
TGTGTGCTAGTTCCCCGAGGCCCCCCACTTCCCTTTTAGAATATGCCCCCCCGACCCCGC
CGCCCGCCCCGTTAGATGCATCGTGGCGTTCTCTTCTCAAGGCTTTGAAATCTCCCCTCT
GCACTCAGATTAGTTTTCAGGTCTGTCTCCCTTCTTTCCCCCCCCCCCCCACTCCGACGA
GATCTTATTTCCTTCGGACAGACTGTAGGTACCTGCCTTGGTTTGTTTCTTCCCGTTCAC
TGCTTGTTTTGTCCCTCCCGGATCCTCGACCAAACAAACGATGCTCATGCTTCAGGACCT
TGTGTGACCAACACGTCAGTTTTCCTTTCTCTGTTATTTATATAAAAATAATTTATCAAA
AGGATATTTTAAAAAAAAAAAAGCTAGTCTGTCTTGAAACTTGTTTACCTTGAAAATTAT
CAGAATCTCAGTGTTTGGAAGTATTGAAGCACAAACTGTATCATCTCTGTACCGTTCTGT
ACTAAAGCACTCGAGTCTAATAAATAAATAAATCAGCGCCCAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               585-701, + strand, RNAz p=0.925705

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               585-701, + strand, RNAz p=0.925705

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003165, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003165, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               134-1301, gnl|bosTau2|chr11 (79543763-79544901)
               

               
               134-1301, gnl|Hg17|chr9 (127533430-127534530)
               

               
               134-1301, gnl|Mm7|chr2 (32796263-32795273)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-1301, gnl|bosTau2|chr11 (79543763-79544901)
               

               
               134-1301, gnl|Hg17|chr9 (127533430-127534530)
               

               
               134-1301, gnl|Mm7|chr2 (32796263-32795273)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               ebs (0.473205)
               

               
               ece (0.45861)
               

               
               cbr (0.255951)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               ebs (0.473205)
               

               
               ece (0.45861)
               

               
               cbr (0.255951)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)

	134-1301, gnl\|bosTau2\|chr11 (79543763-79544901)
	134-1301, gnl\|Hg17\|chr9 (127533430-127534530)
	134-1301, gnl\|Mm7\|chr2 (32796263-32795273)

	fce (0.543183)
	fhi (0.508733)
	ebs (0.473205)
	ece (0.45861)
	cbr (0.255951)
	cbe (0.239234)
	fcc (0.197785)
	nlu (0.191681)
	fbs (0.175346)
	eye (0.170503)
	hyp (0.142837)