Non-Coding RNA Search

Ss1.1-Pig4-TMW8050D09.3

Sequence:


               
               CTCTTTTAGAATTTGTCCAGCAGGTTTTCCGGTTTGTACCGGAAAACCCTTAATCCAGAG
TGTATTCAACAATAGAAAGAGTTGGGGTGTAAGCGAGTTGGTGTCTGATTGACTGGTCTT
AGTTAAATATCCGAAGTCTCAACCTGTTTCCGAGGGCGCGGGGAGGTTGGGACTCCATCA
GTAAGCTTCCGGCTTCAGCTGATACAGCTTCCCTTCCACCCCCACCCGCCTGGGAAGCTG
CACTAGGAGAAGGTTCGCTTTTCTGGAGTGTTTCCGTGGCGCCGCTGCACGTGCATCTTT
TGTCCTATGGCGTCCGCCTCGGCCCAAGCCGCTGCTTTGAGCGCGGAACAGGCCAAGGTG
GTCCTGGCGGAGGTGATCCAAGCGTTCTCGGCCCCGGAGAACGCCGTGCGCATGGACGAG
GCTCGTGATAACGCGTGCAACGACATGGGTAAGATGCTGCAATTCGTGCTGCCCGTGGCC
ACGCAGATTCAGCAGGAGGTTATCAAAGCCTATGGCTTCAGCTGCGACGGGGAAGGTGTT
CTTAAGTTTGCCCGCTTGGTCAAATCTTACGAAGCTCAGGATCCTGAGATCGCCAGCCTG
TCTGGCAAGCTGAAGGCGTTGTTCCTGCCGCCCATGACCCTGCCGCCCCACGGACCTGCT
TCGGGTGGCAGCGTGGCCGCCTCCTGAAGGTTGGCCCTCCCGTGGCACTGCCCGGGAAGG
GAAGACCTTGGTGTTCTGGAGGATAATAAATGTGCCTGGGACTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTTTAGAATTTGTCCAGCAGGTTTTCCGGTTTGTACCGGAAAACCCTTAATCCAGAG
TGTATTCAACAATAGAAAGAGTTGGGGTGTAAGCGAGTTGGTGTCTGATTGACTGGTCTT
AGTTAAATATCCGAAGTCTCAACCTGTTTCCGAGGGCGCGGGGAGGTTGGGACTCCATCA
GTAAGCTTCCGGCTTCAGCTGATACAGCTTCCCTTCCACCCCCACCCGCCTGGGAAGCTG
CACTAGGAGAAGGTTCGCTTTTCTGGAGTGTTTCCGTGGCGCCGCTGCACGTGCATCTTT
TGTCCTATGGCGTCCGCCTCGGCCCAAGCCGCTGCTTTGAGCGCGGAACAGGCCAAGGTG
GTCCTGGCGGAGGTGATCCAAGCGTTCTCGGCCCCGGAGAACGCCGTGCGCATGGACGAG
GCTCGTGATAACGCGTGCAACGACATGGGTAAGATGCTGCAATTCGTGCTGCCCGTGGCC
ACGCAGATTCAGCAGGAGGTTATCAAAGCCTATGGCTTCAGCTGCGACGGGGAAGGTGTT
CTTAAGTTTGCCCGCTTGGTCAAATCTTACGAAGCTCAGGATCCTGAGATCGCCAGCCTG
TCTGGCAAGCTGAAGGCGTTGTTCCTGCCGCCCATGACCCTGCCGCCCCACGGACCTGCT
TCGGGTGGCAGCGTGGCCGCCTCCTGAAGGTTGGCCCTCCCGTGGCACTGCCCGGGAAGG
GAAGACCTTGGTGTTCTGGAGGATAATAAATGTGCCTGGGACTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q545G8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q545G8_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               161-269, + strand, RNAz p=0.992909
               

               
               613-765, - strand, RNAz p=0.940067

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-269, + strand, RNAz p=0.992909
               

               
               613-765, - strand, RNAz p=0.940067

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_138425, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_138425, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               161-358, gnl|bosTau2|chr5 (60331319-60331124)
               

               
               161-358, gnl|Hg17|chr12 (6923391-6923597)
               


               
               534-765, gnl|bosTau2|chr5 (60329888-60329657)
               

               
               534-765, gnl|Hg17|chr12 (6925193-6925426)
               

               
               534-765, gnl|Mm7|chr6 (124764564-124764333)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               161-358, gnl|bosTau2|chr5 (60331319-60331124)
               

               
               161-358, gnl|Hg17|chr12 (6923391-6923597)
               


               
               534-765, gnl|bosTau2|chr5 (60329888-60329657)
               

               
               534-765, gnl|Hg17|chr12 (6925193-6925426)
               

               
               534-765, gnl|Mm7|chr6 (124764564-124764333)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               fce (0.543183)
               

               
               eep (0.490256)
               

               
               nco (0.485201)
               

               
               ebs (0.473205)
               

               
               hyp (0.42851)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               cly (0.361925)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               jca (0.34188)
               

               
               eje (0.296501)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 21 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               eep (0.490256)
               

               
               nco (0.485201)
               

               
               ebs (0.473205)
               

               
               hyp (0.42851)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               cly (0.361925)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               jca (0.34188)
               

               
               eje (0.296501)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	161-269, + strand, RNAz p=0.992909
	613-765, - strand, RNAz p=0.940067

	161-358, gnl\|bosTau2\|chr5 (60331319-60331124)
	161-358, gnl\|Hg17\|chr12 (6923391-6923597)

	534-765, gnl\|bosTau2\|chr5 (60329888-60329657)
	534-765, gnl\|Hg17\|chr12 (6925193-6925426)
	534-765, gnl\|Mm7\|chr6 (124764564-124764333)

	fce (0.543183)
	eep (0.490256)
	nco (0.485201)
	ebs (0.473205)
	hyp (0.42851)
	cov (0.396458)
	fcc (0.39557)
	cly (0.361925)
	med (0.348756)
	ecc (0.345105)
	jca (0.34188)
	eje (0.296501)
	mas (0.210305)
	nep (0.183925)
	fbs (0.175346)
	eli (0.151814)
	cag (0.151194)
	pty (0.142714)
	thg (0.126791)
	ese (0.126502)
	eru (0.120048)