Ss1.1-Pig4-TMW8050D13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTTAGCCGCGCGTCGGGAGGTGAATCTACGTGGGTTGGGGCCGCTGGGCCCAAGGGCG GCGCTCTCTCTCGCATCATGGCCCGAAACGCGGAAAAGGCCATGACGGCCTTGGCAAGAT TTCGCCAAGCTCAGCTGGAAGAGGGAAAAGTAAAGGAGCGAAGACCCTTCCTCGCCTCAG AGTGTACTGAGCTGCCCAAAGCTGAGAAGTGGAGACGACAGATCATTGGAGAGATCTCTA AAAAAGTGGCTCAAATTCAGAATGCTGGTTTAGGTGAATTCCGAATTCGTGACCTGAATG ATGAAATTAACAAGCTGCTAAGAGAGAAAGGACACTGGGAGGTCCGGATCAAGGAGCTGG GTGGTCCTGATTATGGAAAAGTTGGCCCTAAAATGCTGGATCATGAAGGGAAAGAAGTCC CAGGAAATCGAGGTTACAAGTACTTTGGAGCAGCGAAAGATTTGCCTGGTGTCAGAGAAC TGTTTGAGAAGGAACCTCTTCCTCCTCCAAGAAAGACACGTGCTGAGCTCATGAAGGCCA TTGATTTTGAATATTACGGTTACCTAGATGAAGACGATGGTGTTATTGTGCCTTTGGAAC AAGAATATGAAAAGAAACTCAGAGCCGAACTAGTGGAAAAGTGGAAAGCAGAGAGAGAGG CCCGGCTGGCAAGAGGAGAAAAGGAGGAGGAGGAAGAGGAAGAGGAGGTCAACATCTATG CTGTTCCAGAGGAGGAGTCCGATGAGGAAGGCAGCCAGGAGAAAGGAGGGGAGGACGGGC AGCAGAAGTTCATCGCCCACGTCCCGGTGCCATCACAGCAGGAGATCGAGGAGGCGCTTG TGCGGAGGAAGAAGATGGAACTCCTCCAGAAGTACGCCAGCGAGACCCTACAGGCCCAGA GCGAAGAGGCCAAAAGACTGCTGGGGTACTAGGCCCGAGCTTGGCTGTCCAAAGGGCTGT GATGTGCTGGGGGTCTTGGTTCCTCCAGCCTATGTTAACCTTTGGCAGGTGGCACCGGAG GCTTCCTTTTGCATCTCGCCTCCTTTGTCCCTTTCCGATAACTGCCCCATGCCCCTGGTG GGCTTTCTGTGGGCTGAAGGCATCCACATTGCCTCCTTCCAGTGTTTTGCAAGTGTGCGA ACCCACTTATTTCTATCTTGGGTGTGTAAGACAGCCTACTCCCTGGCGGCCTGTGAGTGT CTCAGTAGCCACCTACTGCTATTTGTTGGGGGAATGATCATTTAGTGTCCACTACTGAAA AATGCAGCTTTTCCTAAAAAGGCATATTTGTGATTCCTGTTGAAGAATGAGCAGCTGTGT GAGCCCTGAACCCACATCCCATATGTCACAGCTGGCAGGTTGCCTCTGGGCTCCCTCTGC TGGCCTTGCTTCCTGCCCAGGTGGTGGGAACTTGAGTTTGCTACTTCTGTTTAGGACTGG TCCTGCAGAGAGCTTTTTTATTAAAGGTTTTTGTATTAAAGGGAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTTAGCCGCGCGTCGGGAGGTGAATCTACGTGGGTTGGGGCCGCTGGGCCCAAGGGCG GCGCTCTCTCTCGCATCATGGCCCGAAACGCGGAAAAGGCCATGACGGCCTTGGCAAGAT TTCGCCAAGCTCAGCTGGAAGAGGGAAAAGTAAAGGAGCGAAGACCCTTCCTCGCCTCAG AGTGTACTGAGCTGCCCAAAGCTGAGAAGTGGAGACGACAGATCATTGGAGAGATCTCTA AAAAAGTGGCTCAAATTCAGAATGCTGGTTTAGGTGAATTCCGAATTCGTGACCTGAATG ATGAAATTAACAAGCTGCTAAGAGAGAAAGGACACTGGGAGGTCCGGATCAAGGAGCTGG GTGGTCCTGATTATGGAAAAGTTGGCCCTAAAATGCTGGATCATGAAGGGAAAGAAGTCC CAGGAAATCGAGGTTACAAGTACTTTGGAGCAGCGAAAGATTTGCCTGGTGTCAGAGAAC TGTTTGAGAAGGAACCTCTTCCTCCTCCAAGAAAGACACGTGCTGAGCTCATGAAGGCCA TTGATTTTGAATATTACGGTTACCTAGATGAAGACGATGGTGTTATTGTGCCTTTGGAAC AAGAATATGAAAAGAAACTCAGAGCCGAACTAGTGGAAAAGTGGAAAGCAGAGAGAGAGG CCCGGCTGGCAAGAGGAGAAAAGGAGGAGGAGGAAGAGGAAGAGGAGGTCAACATCTATG CTGTTCCAGAGGAGGAGTCCGATGAGGAAGGCAGCCAGGAGAAAGGAGGGGAGGACGGGC AGCAGAAGTTCATCGCCCACGTCCCGGTGCCATCACAGCAGGAGATCGAGGAGGCGCTTG TGCGGAGGAAGAAGATGGAACTCCTCCAGAAGTACGCCAGCGAGACCCTACAGGCCCAGA GCGAAGAGGCCAAAAGACTGCTGGGGTACTAGGCCCGAGCTTGGCTGTCCAAAGGGCTGT GATGTGCTGGGGGTCTTGGTTCCTCCAGCCTATGTTAACCTTTGGCAGGTGGCACCGGAG GCTTCCTTTTGCATCTCGCCTCCTTTGTCCCTTTCCGATAACTGCCCCATGCCCCTGGTG GGCTTTCTGTGGGCTGAAGGCATCCACATTGCCTCCTTCCAGTGTTTTGCAAGTGTGCGA ACCCACTTATTTCTATCTTGGGTGTGTAAGACAGCCTACTCCCTGGCGGCCTGTGAGTGT CTCAGTAGCCACCTACTGCTATTTGTTGGGGGAATGATCATTTAGTGTCCACTACTGAAA AATGCAGCTTTTCCTAAAAAGGCATATTTGTGATTCCTGTTGAAGAATGAGCAGCTGTGT GAGCCCTGAACCCACATCCCATATGTCACAGCTGGCAGGTTGCCTCTGGGCTCCCTCTGC TGGCCTTGCTTCCTGCCCAGGTGGTGGGAACTTGAGTTTGCTACTTCTGTTTAGGACTGG TCCTGCAGAGAGCTTTTTTATTAAAGGTTTTTGTATTAAAGGGAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 823-933, + strand, RNAz p=0.703621 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 823-933, + strand, RNAz p=0.703621 |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 264-376, gnl|bosTau2|chr22 (47609472-47609360) | |
| 264-376, gnl|canFam2|chr20 (5959064-5958926) | |
| 264-376, gnl|danRer3|chr11 (1105242-1105368) | |
| 264-376, gnl|dasNov1|scaffold_7769 (2074-2184) | |
| 264-376, gnl|echTel1|scaffold_161775 (3309-3170) | |
| 264-376, gnl|fr1|chrUn (318211890-318212007) | |
| 264-376, gnl|galGal2|chr12 (5116175-5116048) | |
| 264-376, gnl|hg17|chr3 (130347304-130347445) | |
| 264-376, gnl|Hg17|chr3 (130347415-130347303) | |
| 264-376, gnl|loxAfr1|scaffold_64431 (1790-1678) | |
| 264-376, gnl|mm7|chr6 (87902679-87902818) | |
| 264-376, gnl|Mm7|chr6 (87902790-87902678) | |
| 264-376, gnl|monDom2|scaffold_5 (47840586-47840446) | |
| 264-376, gnl|oryCun1|scaffold_201989 (19708-19848) | |
| 264-376, gnl|panTro1|chr2 (132399340-132399479) | |
| 264-376, gnl|rheMac2|chr11 (85705962-85705821) | |
| 264-376, gnl|rn3|chr4 (122259266-122259403) | |
| 264-376, gnl|tetNig1|chr11 (11101865-11101750) | |
| 264-376, gnl|xenTro1|scaffold_11588 (2225-2368) | |
| 378-495, gnl|bosTau2|chr22 (47607563-47607446) | |
| 378-495, gnl|canFam2|chr20 (5962740-5962596) | |
| 378-495, gnl|danRer3|chr11 (1104809-1104950) | |
| 378-495, gnl|dasNov1|scaffold_7769 (1956-2077) | |
| 378-495, gnl|echTel1|scaffold_194100 (2405-2561) | |
| 378-495, gnl|fr1|chrUn (318211686-318211798) | |
| 378-495, gnl|hg17|chr3 (130341910-130342068) | |
| 378-495, gnl|Hg17|chr3 (130342026-130341909) | |
| 378-495, gnl|loxAfr1|scaffold_22652 (1988-1836) | |
| 378-495, gnl|mm7|chr6 (87900465-87900615) | |
| 378-495, gnl|Mm7|chr6 (87900581-87900464) | |
| 378-495, gnl|monDom2|scaffold_5 (47845080-47844934) | |
| 378-495, gnl|oryCun1|scaffold_201989 (17963-18115) | |
| 378-495, gnl|panTro1|chr2 (132393546-132393704) | |
| 378-495, gnl|rheMac2|chr11 (85711590-85711433) | |
| 378-495, gnl|rn3|chr4 (122257471-122257622) | |
| 378-495, gnl|tetNig1|chr11 (11102068-11101955) | |
| 378-495, gnl|xenTro1|scaffold_11588 (1081-1225) | |
| 498-618, gnl|bosTau2|chr22 (47612908-47612788) | |
| 498-618, gnl|canFam2|chr20 (5967233-5967087) | |
| 498-618, gnl|danRer3|chr11 (1103400-1103529) | |
| 498-618, gnl|dasNov1|scaffold_113726 (1089-943) | |
| 498-618, gnl|echTel1|scaffold_291499 (51460-51605) | |
| 498-618, gnl|fr1|chrUn (318211463-318211596) | |
| 498-618, gnl|hg17|chr3 (130336365-130336508) | |
| 498-618, gnl|Hg17|chr3 (130336493-130336373) | |
| 498-618, gnl|loxAfr1|scaffold_22652 (4002-3857) | |
| 498-618, gnl|mm7|chr6 (87897425-87897571) | |
| 498-618, gnl|Mm7|chr6 (87897553-87897433) | |
| 498-618, gnl|monDom2|scaffold_5 (47846791-47846654) | |
| 498-618, gnl|oryCun1|scaffold_201989 (14781-14927) | |
| 498-618, gnl|panTro1|chr2 (132387987-132388130) | |
| 498-618, gnl|rheMac2|chr11 (85717910-85717767) | |
| 498-618, gnl|rn3|chr4 (122254460-122254604) | |
| 498-618, gnl|tetNig1|chr11 (11102274-11102137) | |
| 620-737, gnl|bosTau2|chr22 (47611992-47611875) | |
| 620-737, gnl|canFam2|chr20 (5969232-5969087) | |
| 620-737, gnl|danRer3|chr11 (1099764-1099891) | |
| 620-737, gnl|dasNov1|scaffold_113726 (2605-2468) | |
| 620-737, gnl|echTel1|scaffold_291499 (49361-49494) | |
| 620-737, gnl|hg17|chr3 (130335603-130335742) | |
| 620-737, gnl|Hg17|chr3 (130335735-130335615) | |
| 620-737, gnl|loxAfr1|scaffold_22652 (5093-4963) | |
| 620-737, gnl|mm7|chr6 (87896589-87896728) | |
| 620-737, gnl|Mm7|chr6 (87896721-87896601) | |
| 620-737, gnl|monDom2|scaffold_5 (47852817-47852687) | |
| 620-737, gnl|oryCun1|scaffold_201989 (12997-13136) | |
| 620-737, gnl|panTro1|chr2 (132387225-132387364) | |
| 620-737, gnl|rheMac2|chr11 (85718673-85718534) | |
| 620-737, gnl|rn3|chr4 (122253599-122253735) | |
| 823-933, gnl|bosTau2|chr22 (47615762-47615652) | |
| 823-933, gnl|Hg17|chr3 (130331731-130331622) | |
| 823-933, gnl|Mm7|chr6 (87894298-87894188) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 264-376, gnl|bosTau2|chr22 (47609472-47609360) | |
| 264-376, gnl|canFam2|chr20 (5959064-5958926) | |
| 264-376, gnl|danRer3|chr11 (1105242-1105368) | |
| 264-376, gnl|dasNov1|scaffold_7769 (2074-2184) | |
| 264-376, gnl|echTel1|scaffold_161775 (3309-3170) | |
| 264-376, gnl|fr1|chrUn (318211890-318212007) | |
| 264-376, gnl|galGal2|chr12 (5116175-5116048) | |
| 264-376, gnl|hg17|chr3 (130347304-130347445) | |
| 264-376, gnl|Hg17|chr3 (130347415-130347303) | |
| 264-376, gnl|loxAfr1|scaffold_64431 (1790-1678) | |
| 264-376, gnl|mm7|chr6 (87902679-87902818) | |
| 264-376, gnl|Mm7|chr6 (87902790-87902678) | |
| 264-376, gnl|monDom2|scaffold_5 (47840586-47840446) | |
| 264-376, gnl|oryCun1|scaffold_201989 (19708-19848) | |
| 264-376, gnl|panTro1|chr2 (132399340-132399479) | |
| 264-376, gnl|rheMac2|chr11 (85705962-85705821) | |
| 264-376, gnl|rn3|chr4 (122259266-122259403) | |
| 264-376, gnl|tetNig1|chr11 (11101865-11101750) | |
| 264-376, gnl|xenTro1|scaffold_11588 (2225-2368) | |
| 378-495, gnl|bosTau2|chr22 (47607563-47607446) | |
| 378-495, gnl|canFam2|chr20 (5962740-5962596) | |
| 378-495, gnl|danRer3|chr11 (1104809-1104950) | |
| 378-495, gnl|dasNov1|scaffold_7769 (1956-2077) | |
| 378-495, gnl|echTel1|scaffold_194100 (2405-2561) | |
| 378-495, gnl|fr1|chrUn (318211686-318211798) | |
| 378-495, gnl|hg17|chr3 (130341910-130342068) | |
| 378-495, gnl|Hg17|chr3 (130342026-130341909) | |
| 378-495, gnl|loxAfr1|scaffold_22652 (1988-1836) | |
| 378-495, gnl|mm7|chr6 (87900465-87900615) | |
| 378-495, gnl|Mm7|chr6 (87900581-87900464) | |
| 378-495, gnl|monDom2|scaffold_5 (47845080-47844934) | |
| 378-495, gnl|oryCun1|scaffold_201989 (17963-18115) | |
| 378-495, gnl|panTro1|chr2 (132393546-132393704) | |
| 378-495, gnl|rheMac2|chr11 (85711590-85711433) | |
| 378-495, gnl|rn3|chr4 (122257471-122257622) | |
| 378-495, gnl|tetNig1|chr11 (11102068-11101955) | |
| 378-495, gnl|xenTro1|scaffold_11588 (1081-1225) | |
| 498-618, gnl|bosTau2|chr22 (47612908-47612788) | |
| 498-618, gnl|canFam2|chr20 (5967233-5967087) | |
| 498-618, gnl|danRer3|chr11 (1103400-1103529) | |
| 498-618, gnl|dasNov1|scaffold_113726 (1089-943) | |
| 498-618, gnl|echTel1|scaffold_291499 (51460-51605) | |
| 498-618, gnl|fr1|chrUn (318211463-318211596) | |
| 498-618, gnl|hg17|chr3 (130336365-130336508) | |
| 498-618, gnl|Hg17|chr3 (130336493-130336373) | |
| 498-618, gnl|loxAfr1|scaffold_22652 (4002-3857) | |
| 498-618, gnl|mm7|chr6 (87897425-87897571) | |
| 498-618, gnl|Mm7|chr6 (87897553-87897433) | |
| 498-618, gnl|monDom2|scaffold_5 (47846791-47846654) | |
| 498-618, gnl|oryCun1|scaffold_201989 (14781-14927) | |
| 498-618, gnl|panTro1|chr2 (132387987-132388130) | |
| 498-618, gnl|rheMac2|chr11 (85717910-85717767) | |
| 498-618, gnl|rn3|chr4 (122254460-122254604) | |
| 498-618, gnl|tetNig1|chr11 (11102274-11102137) | |
| 620-737, gnl|bosTau2|chr22 (47611992-47611875) | |
| 620-737, gnl|canFam2|chr20 (5969232-5969087) | |
| 620-737, gnl|danRer3|chr11 (1099764-1099891) | |
| 620-737, gnl|dasNov1|scaffold_113726 (2605-2468) | |
| 620-737, gnl|echTel1|scaffold_291499 (49361-49494) | |
| 620-737, gnl|hg17|chr3 (130335603-130335742) | |
| 620-737, gnl|Hg17|chr3 (130335735-130335615) | |
| 620-737, gnl|loxAfr1|scaffold_22652 (5093-4963) | |
| 620-737, gnl|mm7|chr6 (87896589-87896728) | |
| 620-737, gnl|Mm7|chr6 (87896721-87896601) | |
| 620-737, gnl|monDom2|scaffold_5 (47852817-47852687) | |
| 620-737, gnl|oryCun1|scaffold_201989 (12997-13136) | |
| 620-737, gnl|panTro1|chr2 (132387225-132387364) | |
| 620-737, gnl|rheMac2|chr11 (85718673-85718534) | |
| 620-737, gnl|rn3|chr4 (122253599-122253735) | |
| 823-933, gnl|bosTau2|chr22 (47615762-47615652) | |
| 823-933, gnl|Hg17|chr3 (130331731-130331622) | |
| 823-933, gnl|Mm7|chr6 (87894298-87894188) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| cga (0.279096) | |
| duo (0.172801) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jca (0.11396) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| duo (0.172801) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jca (0.11396) |