Non-Coding RNA Search

Ss1.1-Pig4-TMW8050D17.5

Sequence:


               
               AGGGGAGGCCCAGACGCAGCCCTTCGCAATCCGTTGGGATTACCTCATCTCAGCAGAAAG
TGACCACATGCCTTTGTGTGTGGCTTTTATGCCCTTCCCTTTCTTAGATCTTGTTTGTGG
TTTTAGGTGATATGGCGGTTTAACTGCCCTTTAAAGGCCACTGAGGACCACTGACACCTG
TTCCTTTACACTGTGGGGCGAGATGCTTGGCTCCGAGCATCATCGGTCACGAGCGTTTCC
TTCCTTTTGCTCACTCCGTGAAGATGTTTTCATGCCCTGGCTTTCCCATGTTTTGCTGGT
CAAAAGTGCCACCTCCCTTCCTTGTGAACTTGCAGCTTTAATCTCAAGGGAATCCCCACT
TTGGAAAAAAGCCTCTGGAAATTCCAGAACTAAGTCTAACCAGAGAGATTGCCCTGAAAC
CCGGTTCTGAGGCTGAACAGACTGCAGGCCTCATGGGTGCCGATCCTTATTGGGGTCTGC
GGGCATGCAGGGGGCCTGGGGTGCTCAGCAGGTGCTTTGTGTGTCACAGCCAAGAGGAAG
CAAGGCGATGGCCCGGCCATTTTCTGAGGAGCTTACATAGCCTACCTTCTCTCCCTTCCA
CATCCACCAGTCCTGTCCTGTGAGATGTGTAGGCACCGCCACCTCAGTCCCACCGAAGCC
TCCTGTGCTCATGCCCATTTCCTACGTGCGTCAATGGCGCAGACGAACAGAGCAGGCGCA
GTGGGGAGGGAAGAAGGTGCTCTTTGGCCCCATGTCTTCATTTGAAGGGTGTGGGCTTTC
AGGGGGACATTGCTGGCCCCTAATCGATAGACGGAGTCCATTCGGGAAAATGATGCGCGT
TCACCGTGTCTGAATGCAAGGGTGCCGGAGGGCTGGCTGGCCCTGGGACGCGTAGCGATT
TGAATTTGGATTGGCTCACAGCGGTAGAAAAGCAGGTTGCTGCACCTAAGTGAAGCGGTT
CCAAGAGATTTAAAAGGGAAAAAAAAAGAAACTGAAGCCAGTATTTTCATAATTTGTGTG
TGCGTATGTGCATTTTCTCTTGGGCCGGGGGATACCATCAAAGGGTGAGCGTTTCTGCTT
CCTCTGAAAACCCCCGGGACCTTCTTTGTTCGGCCATTTGTGTGGAAATGTGGCGGCCGC
TGAGTGGTAATGGCGGCCTCCAGTGGCTGGGAGACCTCATTGCAAGTTGCCGACCGGAGC
TTTAGTCCTCCGAAACCCAGAGAGGAAAACGGCCGCCTGCTCTCTTGACTTAGCTATGTC
TACGATGTTGCATTAATGAAAAACAACACTGTGCGAGGCCCGTTCCCGGACATGGATGTG
ACCACACCCTCTTTCCCCAGGGTGTTTCTGTAGCAAGTTTTCATATTCTTTTCAAACAAT
GGTTTCTCTGCGTTAATTGTTGAAGAAGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGAGGCCCAGACGCAGCCCTTCGCAATCCGTTGGGATTACCTCATCTCAGCAGAAAG
TGACCACATGCCTTTGTGTGTGGCTTTTATGCCCTTCCCTTTCTTAGATCTTGTTTGTGG
TTTTAGGTGATATGGCGGTTTAACTGCCCTTTAAAGGCCACTGAGGACCACTGACACCTG
TTCCTTTACACTGTGGGGCGAGATGCTTGGCTCCGAGCATCATCGGTCACGAGCGTTTCC
TTCCTTTTGCTCACTCCGTGAAGATGTTTTCATGCCCTGGCTTTCCCATGTTTTGCTGGT
CAAAAGTGCCACCTCCCTTCCTTGTGAACTTGCAGCTTTAATCTCAAGGGAATCCCCACT
TTGGAAAAAAGCCTCTGGAAATTCCAGAACTAAGTCTAACCAGAGAGATTGCCCTGAAAC
CCGGTTCTGAGGCTGAACAGACTGCAGGCCTCATGGGTGCCGATCCTTATTGGGGTCTGC
GGGCATGCAGGGGGCCTGGGGTGCTCAGCAGGTGCTTTGTGTGTCACAGCCAAGAGGAAG
CAAGGCGATGGCCCGGCCATTTTCTGAGGAGCTTACATAGCCTACCTTCTCTCCCTTCCA
CATCCACCAGTCCTGTCCTGTGAGATGTGTAGGCACCGCCACCTCAGTCCCACCGAAGCC
TCCTGTGCTCATGCCCATTTCCTACGTGCGTCAATGGCGCAGACGAACAGAGCAGGCGCA
GTGGGGAGGGAAGAAGGTGCTCTTTGGCCCCATGTCTTCATTTGAAGGGTGTGGGCTTTC
AGGGGGACATTGCTGGCCCCTAATCGATAGACGGAGTCCATTCGGGAAAATGATGCGCGT
TCACCGTGTCTGAATGCAAGGGTGCCGGAGGGCTGGCTGGCCCTGGGACGCGTAGCGATT
TGAATTTGGATTGGCTCACAGCGGTAGAAAAGCAGGTTGCTGCACCTAAGTGAAGCGGTT
CCAAGAGATTTAAAAGGGAAAAAAAAAGAAACTGAAGCCAGTATTTTCATAATTTGTGTG
TGCGTATGTGCATTTTCTCTTGGGCCGGGGGATACCATCAAAGGGTGAGCGTTTCTGCTT
CCTCTGAAAACCCCCGGGACCTTCTTTGTTCGGCCATTTGTGTGGAAATGTGGCGGCCGC
TGAGTGGTAATGGCGGCCTCCAGTGGCTGGGAGACCTCATTGCAAGTTGCCGACCGGAGC
TTTAGTCCTCCGAAACCCAGAGAGGAAAACGGCCGCCTGCTCTCTTGACTTAGCTATGTC
TACGATGTTGCATTAATGAAAAACAACACTGTGCGAGGCCCGTTCCCGGACATGGATGTG
ACCACACCCTCTTTCCCCAGGGTGTTTCTGTAGCAAGTTTTCATATTCTTTTCAAACAAT
GGTTTCTCTGCGTTAATTGTTGAAGAAGAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               283-1413, gnl|bosTau2|chr3 (22327734-22326618)
               

               
               283-1413, gnl|Hg17|chr1 (116830373-116829216)
               

               
               283-1413, gnl|Mm7|chr3 (101256449-101257514)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               283-1413, gnl|bosTau2|chr3 (22327734-22326618)
               

               
               283-1413, gnl|Hg17|chr1 (116830373-116829216)
               

               
               283-1413, gnl|Mm7|chr3 (101256449-101257514)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               ece (0.45861)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	283-1413, gnl\|bosTau2\|chr3 (22327734-22326618)
	283-1413, gnl\|Hg17\|chr1 (116830373-116829216)
	283-1413, gnl\|Mm7\|chr3 (101256449-101257514)

	ece (0.45861)
	nms (0.213858)
	fcc (0.197785)
	sto (0.179824)
	cje (0.165235)
	ste (0.135208)
	cov (0.132153)
	ebs (0.118301)
	ecc (0.115035)
	jej (0.0989218)