Non-Coding RNA Search

Ss1.1-Pig4-TMW8050E01.5

Sequence:


               
               AGGGAAGATGGCGGTGACCGGCTGGCTGGAGAGTCTCCGAGCGGCCGAGAAGACGGCGCT
GTTGCAGGACGGGAGAAGGAAGGTGCACTATTTGTTCCCAGATGGGAAGGAAATGGCGGA
AGAATATGATGAGAAGACAAGTGAACTACTCGTGAGGAAGTGGCGTGTGAAGAGTGCCCT
GGGAGCCTTGGGCCAGTGGCAGATTGAGGTGGGAGAGCCAGCAGTCCCAGGAGCAGGGAG
CCTGGGGCCTGAACTCATCACAGAAAGCAATGCCAACCCCATCTTCATGCGCAAGGACAC
CAAGATGAGTTTCCAGTGGCGAATTCGAAACCTCCCATACCCTAAGGATGTCTACAGTGT
CTCTGTGGACCAGAAGGAGCGCTGTGTCGTTGTCAGAACAACCAACAAAAAGTACTACAA
GAAGTTCCCCATTCCTGACCTAGACAGATACCAGCTACCTCTGGATGACTCCTTGCTGAG
CTTTGCTCATGCCAACTCTACCCTCATCATCTCCTACCACAAGCCCAAGGAGGTCCTGGT
AGCTGAGTCAGAGCTGCAGAAGGAGCTGAAGAAGGTGAAGACAGCCCACAACAGTGACGG
GGATTGCAAGACCCAGTAGTAGACCCATGAACCTGCACTTCTGATGCTGAGTCTGGGTGA
GGTTCTTCCTACAGACCTGTCAGAGTTTGAGGCTTGGGCCTTTCCAGCCCGGGGCAGCCT
CTTTCCTTTCAGCAGCTGTCCAGGCTCTGTAAGAACCGGGGCCTTCCTAGCCCCTGAGTC
ATGGTTTTCTCTCCTGAGTAAAGTCATTCTGAGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGAAGATGGCGGTGACCGGCTGGCTGGAGAGTCTCCGAGCGGCCGAGAAGACGGCGCT
GTTGCAGGACGGGAGAAGGAAGGTGCACTATTTGTTCCCAGATGGGAAGGAAATGGCGGA
AGAATATGATGAGAAGACAAGTGAACTACTCGTGAGGAAGTGGCGTGTGAAGAGTGCCCT
GGGAGCCTTGGGCCAGTGGCAGATTGAGGTGGGAGAGCCAGCAGTCCCAGGAGCAGGGAG
CCTGGGGCCTGAACTCATCACAGAAAGCAATGCCAACCCCATCTTCATGCGCAAGGACAC
CAAGATGAGTTTCCAGTGGCGAATTCGAAACCTCCCATACCCTAAGGATGTCTACAGTGT
CTCTGTGGACCAGAAGGAGCGCTGTGTCGTTGTCAGAACAACCAACAAAAAGTACTACAA
GAAGTTCCCCATTCCTGACCTAGACAGATACCAGCTACCTCTGGATGACTCCTTGCTGAG
CTTTGCTCATGCCAACTCTACCCTCATCATCTCCTACCACAAGCCCAAGGAGGTCCTGGT
AGCTGAGTCAGAGCTGCAGAAGGAGCTGAAGAAGGTGAAGACAGCCCACAACAGTGACGG
GGATTGCAAGACCCAGTAGTAGACCCATGAACCTGCACTTCTGATGCTGAGTCTGGGTGA
GGTTCTTCCTACAGACCTGTCAGAGTTTGAGGCTTGGGCCTTTCCAGCCCGGGGCAGCCT
CTTTCCTTTCAGCAGCTGTCCAGGCTCTGTAAGAACCGGGGCCTTCCTAGCCCCTGAGTC
ATGGTTTTCTCTCCTGAGTAAAGTCATTCTGAGTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57209473|emb|CAI41040.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57209473|emb|CAI41040.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-276, + strand, RNAz p=0.864417

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-276, + strand, RNAz p=0.864417

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               146-276, gnl|bosTau2|chr26 (13986166-13986297)
               

               
               146-276, gnl|Hg17|chr10 (103350477-103350608)
               

               
               146-276, gnl|Mm7|chr19 (45468780-45468911)
               


               
               278-414, gnl|bosTau2|chr26 (13986613-13986749)
               

               
               278-414, gnl|Hg17|chr10 (103350950-103351086)
               

               
               278-414, gnl|Mm7|chr19 (45469308-45469444)
               


               
               487-816, gnl|bosTau2|chr26 (13994526-13994858)
               

               
               487-816, gnl|Hg17|chr10 (103359084-103359400)
               

               
               487-816, gnl|Mm7|chr19 (45474345-45474652)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-276, gnl|bosTau2|chr26 (13986166-13986297)
               

               
               146-276, gnl|Hg17|chr10 (103350477-103350608)
               

               
               146-276, gnl|Mm7|chr19 (45468780-45468911)
               


               
               278-414, gnl|bosTau2|chr26 (13986613-13986749)
               

               
               278-414, gnl|Hg17|chr10 (103350950-103351086)
               

               
               278-414, gnl|Mm7|chr19 (45469308-45469444)
               


               
               487-816, gnl|bosTau2|chr26 (13994526-13994858)
               

               
               487-816, gnl|Hg17|chr10 (103359084-103359400)
               

               
               487-816, gnl|Mm7|chr19 (45474345-45474652)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fbs (0.350693)
               

               
               ssp (0.271039)
               

               
               cbr (0.255951)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               ssp (0.271039)
               

               
               cbr (0.255951)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	146-276, gnl\|bosTau2\|chr26 (13986166-13986297)
	146-276, gnl\|Hg17\|chr10 (103350477-103350608)
	146-276, gnl\|Mm7\|chr19 (45468780-45468911)

	278-414, gnl\|bosTau2\|chr26 (13986613-13986749)
	278-414, gnl\|Hg17\|chr10 (103350950-103351086)
	278-414, gnl\|Mm7\|chr19 (45469308-45469444)

	487-816, gnl\|bosTau2\|chr26 (13994526-13994858)
	487-816, gnl\|Hg17\|chr10 (103359084-103359400)
	487-816, gnl\|Mm7\|chr19 (45474345-45474652)

	fbs (0.350693)
	ssp (0.271039)
	cbr (0.255951)
	hea (0.204499)
	fcc (0.197785)
	cut (0.169924)
	hyp (0.142837)
	pgl (0.118483)
	ebs (0.118301)
	spc (0.113366)