Non-Coding RNA Search

Ss1.1-Pig4-TMW8050E09.3

Sequence:


               
               TTCCTTTGCATAGCCTAGATGAGAAAACACTTGTACAAATACTAACTGAGCCACGTAATG
CTGTTATCCCTCAGTACCAGGCCTTATTCAGCATGGATAAGTGTGAACTGAATGTTACTG
AAGATGCTTTGAAAGCTATAGCGAGATTGGCACTAGAACGAAAAACAGGTGCACGTGGCC
TTCGTTCCATAATGGAAAAGCTGTTACTAGAACCAATGTTCGAAGTCCCTAATTCTGATA
TTGTATGTGTGGAGGTTGATAAAGAAGTCGTAGAAGGAAAGAAGGAACCAGGATACATCC
GGGCTCCTACAAAAGAATCCTCTGAAGAGGAGTATGACTCTGGAGTTGAAGAAGAAGGAT
GGCCTCGTCAAGCAGATGCTGCAAACAGCTAAACTGTCAGACTTCTGTATATAAAGTTTT
CCTTCTTTTGCTTAGAATCTTAACTGTCTCCGCAGTCTGACATTAAAAGTATTGGATCTA
TCTTGGATATCATACATGGTCAGAAGCTTTTATGATAAAAATCAGATCATGTATATTATG
TAACATCACATTGATTTATACAGAGGACATTATGTGGACTTTAATGACACAATGTTCAGA
GATAAAATGTACATTATTTTGGTTCAGTTTTTAAAAAATATGCTTTAACACAATTCTTAG
AGGTTCTTTTAAGCAATGCAGGTATTGCAATAACTGTGGATCTTACAATAATGTTACTCT
ACAAATGGGAAAATAAATTCTTTAAGATTAAAGATTGGGATTCCATTCTTTAGTTTAACC
TTCTCTACCCATATTTGTTTCTTGAAAATATTATAACTTTAATCATCTTAAGAATTGGAA
CAGGTAGTTTCCAGGTAGTTAAAGATTTCATGGAAAAAGTACCCTGAAGAACCATATTTT
GATGATTTGTTTAGCTCTATTCTTAGTCTTATCTGCTAATGCATGACACTAACTTCCCAA
TTGGTACTATGAAAAGGCTATTCTCTTGCTGAGTAGTCTAATTTATTTGCCCTCTTGGCG
TCCATTTTAGTAACAAGTGAGCAGATTGAAGTCTGCCTTATATCTTCAGAAGACGACTGA
TTCTAAAAGTAGCATGCAGCCTCAGTCATAACAGCCATGTGCTGAACTAAATAAAATATC
CCAATATTGTACACTTACCTAAAGTACTTAGTTTTTTGTTTTGTTTTTTGGTGCTAGATA
CTTGTCCAATTCTTTGGCTTCGTAGAACATTAAAAGAAAATCTGTGCTTTGCTATCAGCA
GAAGTAAATGTGTTCATACTAAAATATAAGTTGTTAACTTTCATTATATACCAAAATTAA
ACAGTAGGGGAAATGCAGGGAGCTTAATGATGAAAATGATTTCATTTGATTCCACGAATA
TTAAAATATTTGGGTACCTTTTAAACTTTTTCTTTCCTTCTATGTTGATCCAGGTTGCTA
TACTATTCATTCAGTTCAGCCTCACTGGAAGTTTTCTAAAGCAGTTCCTTTAAAAACTTG
TTTTCAATTTTTGGTTTATAAACTCTTGAATTTTTCTTTACCTTCCACCCCCCTCCCCTT
TTCTTAGCTAATGGCAAATTCTAAGTCTTGTTGGTAGAGTTGGGCTTTCTGTGATGTAAT
AAGAGATGTGAAATATCTATATAGGCTGAGGTAGGACCAGAAATGCACTTTTGCAAAATG
TTTAAGCCTGGTTGCTGTAGTATGGAACAGAAACTGGTATCCTTCTTGGTCGCGCTAGTA
ATGGTTAAAGTTCTCTTTCACATTATAACTGTTCATTATTTTTTTCTTACAGCCTCATCA
TTTTCCTTTTTGTAGAGTGAAAATTGGAGTAGTTACTGAATATATTAAAGACAGTCCTCC
AGAAATGGACTGGGAGACATTTTAGTCACAACAACTTACATTCTGTTTTGGAAGTTGTTA
AAAAGCATAAGTCATGTTTTTAAATTAAAAACAACTGAGTATAACTACAATTTGTATCTT
GAAACCTGTTTTGGCATTTGAATAAAGCAAAAAGATTAAATGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTTTGCATAGCCTAGATGAGAAAACACTTGTACAAATACTAACTGAGCCACGTAATG
CTGTTATCCCTCAGTACCAGGCCTTATTCAGCATGGATAAGTGTGAACTGAATGTTACTG
AAGATGCTTTGAAAGCTATAGCGAGATTGGCACTAGAACGAAAAACAGGTGCACGTGGCC
TTCGTTCCATAATGGAAAAGCTGTTACTAGAACCAATGTTCGAAGTCCCTAATTCTGATA
TTGTATGTGTGGAGGTTGATAAAGAAGTCGTAGAAGGAAAGAAGGAACCAGGATACATCC
GGGCTCCTACAAAAGAATCCTCTGAAGAGGAGTATGACTCTGGAGTTGAAGAAGAAGGAT
GGCCTCGTCAAGCAGATGCTGCAAACAGCTAAACTGTCAGACTTCTGTATATAAAGTTTT
CCTTCTTTTGCTTAGAATCTTAACTGTCTCCGCAGTCTGACATTAAAAGTATTGGATCTA
TCTTGGATATCATACATGGTCAGAAGCTTTTATGATAAAAATCAGATCATGTATATTATG
TAACATCACATTGATTTATACAGAGGACATTATGTGGACTTTAATGACACAATGTTCAGA
GATAAAATGTACATTATTTTGGTTCAGTTTTTAAAAAATATGCTTTAACACAATTCTTAG
AGGTTCTTTTAAGCAATGCAGGTATTGCAATAACTGTGGATCTTACAATAATGTTACTCT
ACAAATGGGAAAATAAATTCTTTAAGATTAAAGATTGGGATTCCATTCTTTAGTTTAACC
TTCTCTACCCATATTTGTTTCTTGAAAATATTATAACTTTAATCATCTTAAGAATTGGAA
CAGGTAGTTTCCAGGTAGTTAAAGATTTCATGGAAAAAGTACCCTGAAGAACCATATTTT
GATGATTTGTTTAGCTCTATTCTTAGTCTTATCTGCTAATGCATGACACTAACTTCCCAA
TTGGTACTATGAAAAGGCTATTCTCTTGCTGAGTAGTCTAATTTATTTGCCCTCTTGGCG
TCCATTTTAGTAACAAGTGAGCAGATTGAAGTCTGCCTTATATCTTCAGAAGACGACTGA
TTCTAAAAGTAGCATGCAGCCTCAGTCATAACAGCCATGTGCTGAACTAAATAAAATATC
CCAATATTGTACACTTACCTAAAGTACTTAGTTTTTTGTTTTGTTTTTTGGTGCTAGATA
CTTGTCCAATTCTTTGGCTTCGTAGAACATTAAAAGAAAATCTGTGCTTTGCTATCAGCA
GAAGTAAATGTGTTCATACTAAAATATAAGTTGTTAACTTTCATTATATACCAAAATTAA
ACAGTAGGGGAAATGCAGGGAGCTTAATGATGAAAATGATTTCATTTGATTCCACGAATA
TTAAAATATTTGGGTACCTTTTAAACTTTTTCTTTCCTTCTATGTTGATCCAGGTTGCTA
TACTATTCATTCAGTTCAGCCTCACTGGAAGTTTTCTAAAGCAGTTCCTTTAAAAACTTG
TTTTCAATTTTTGGTTTATAAACTCTTGAATTTTTCTTTACCTTCCACCCCCCTCCCCTT
TTCTTAGCTAATGGCAAATTCTAAGTCTTGTTGGTAGAGTTGGGCTTTCTGTGATGTAAT
AAGAGATGTGAAATATCTATATAGGCTGAGGTAGGACCAGAAATGCACTTTTGCAAAATG
TTTAAGCCTGGTTGCTGTAGTATGGAACAGAAACTGGTATCCTTCTTGGTCGCGCTAGTA
ATGGTTAAAGTTCTCTTTCACATTATAACTGTTCATTATTTTTTTCTTACAGCCTCATCA
TTTTCCTTTTTGTAGAGTGAAAATTGGAGTAGTTACTGAATATATTAAAGACAGTCCTCC
AGAAATGGACTGGGAGACATTTTAGTCACAACAACTTACATTCTGTTTTGGAAGTTGTTA
AAAAGCATAAGTCATGTTTTTAAATTAAAAACAACTGAGTATAACTACAATTTGTATCTT
GAAACCTGTTTTGGCATTTGAATAAAGCAAAAAGATTAAATGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1830-1947, - strand, RNAz p=0.51398

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1830-1947, - strand, RNAz p=0.51398

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               301-2025, gnl|bosTau2|chr10 (8528490-8526753)
               

               
               301-2025, gnl|Hg17|chr15 (63230305-63227610)
               

               
               301-2025, gnl|Mm7|chr9 (65359454-65361138)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               301-2025, gnl|bosTau2|chr10 (8528490-8526753)
               

               
               301-2025, gnl|Hg17|chr15 (63230305-63227610)
               

               
               301-2025, gnl|Mm7|chr9 (65359454-65361138)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

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               kid (0.778412)
               

               
               gul (0.710353)
               

               
               vin (0.665115)
               

               
               liv (0.585137)
               

               
               rec (0.519211)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               ret (0.3862)
               

               
               ctl (0.306138)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.778412)
               

               
               gul (0.710353)
               

               
               vin (0.665115)
               

               
               liv (0.585137)
               

               
               rec (0.519211)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               ret (0.3862)
               

               
               ctl (0.306138)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

	301-2025, gnl\|bosTau2\|chr10 (8528490-8526753)
	301-2025, gnl\|Hg17\|chr15 (63230305-63227610)
	301-2025, gnl\|Mm7\|chr9 (65359454-65361138)

	kid (0.778412)
	gul (0.710353)
	vin (0.665115)
	liv (0.585137)
	rec (0.519211)
	mga (0.480615)
	mgp (0.461361)
	ret (0.3862)
	ctl (0.306138)
	sme (0.305437)
	isp (0.300752)
	cte (0.29274)
	bla (0.248694)
	eru (0.240096)
	spc (0.226732)
	hea (0.204499)
	aor (0.195274)
	ldo (0.194005)
	mgm (0.180343)
	fbs (0.175346)
	tbr (0.154178)
	lun (0.150489)
	bfe (0.149858)
	fat (0.147427)
	ski (0.146735)
	hlv (0.139256)
	lyg (0.133103)
	ova (0.129132)
	thg (0.126791)