Ss1.1-Pig4-TMW8050E15.5
|
GAGTGCGTTTCCGGTTCCGCCACCGCCGCGGTGGCCGAATTATTCTTGGGGTGGAAGCGT
CGTCGGCTAGGACTCTGCACTATGTCGGGTGGCCTGCTGAAGGCGCTGCGCAGCGACTCC
TACGTCGAACTGAGCCAGTACCGGGACCAGCACTTCCGGGGTGACAATGAAGAACAGGAG
AAGTTACTGAAGAAAAGCTGTACATTGTATGTTGGAAATCTTTCCTTTTATACAACTGAA
GAACAAATCTATGAACTCTTCAGCAAAAGTGGTGACATAAAGAAAATCATCATGGGCCTG
GATAAAATGAAGAAAACAGCGTGTGGGTTTTGCTTTGTGGAATACTATTCAAGAGCAGAT
GCTGAAAATGCCATGCGGTACATAAATGGAACTCGTCTGGATGACCGCATCATTCGCACA
GACTGGGATGCAGGCTTTAAAGAGGGCAGGCAGTATGGCCGTGGACGATCTGGGGGCCAG
GTACGAGATGAGTATCGACAGGACTATGATGCTGGGAGAGGTGGCTATGGAAAATTGGCC
CAAAACCAGTGAGTGGTGAAAGCCCCATCATGAAAAACTCACTCCTTTGGCCTGTTGAAT
CTGATGTGCATTACCGAAGGTCTGCAAACCTGCCTGTTTTTACCAAGCTTTAATCAATGT
TTCTACTGAGCCGGAAGCCTCTTCATGGTTTTCCTCTTCAAATTATTAAAGGACAGAATC
CAAAAGAATGCCTTTAATTCTATAGTGTTAGAATCCTGTGTCAGATTACCAGAATGATTT
CTGTTACCAGGTCAAAAAAATTGTGTTCCTTAGCAGCATATTTGGTGTATAATGTTGATC
CATCAGCCAAAAATAATACACTTCTTTTAGGAAGATTGGAAAAAGGATTTAAGTGTTTAC
CATGTTTGCATCTAACTAGGTTCATGGTCTTCTACCTTGAGACCTAGAATTACTATTTTA
AAATTTTTAAGTTTGCCTGACATAAAGTTTATTAAAGTAGAGCTTTGCTAGCTATGTAAT
GTAGCTTTGCAGTTAAATTAGGAACTGGTATTTGACAACTGAATTTTTTTCCATTTGAAT
TCTAATCTCTAAAGGCAAACTTAAGGAGTTCTTTTGTAGTGCGGTGGGTTGAGGATCCAT
CATTGTCACATGTCACAACATTGCAGTGGCATGGGTTCAATCCCTGGCCCGGAAACGTCA
CATGCCTCAGGTGCAAGTTAAAAAAAAAAAGGCAAACTTAAAGAGTCAAGAGAACTTCCT
AAATAGTGTAAAAATGATAAGCCGTAGTCCCAGGGGATACCACCTGCTTACATGCTTTAT
ATATCTGGAAATCAGGTATAGGACTTGAAGGGTATTTACTAAACACATTTTTCAAAAGAT
GCAGTTTAGCTAAAGCTAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGTGCGTTTCCGGTTCCGCCACCGCCGCGGTGGCCGAATTATTCTTGGGGTGGAAGCGT
CGTCGGCTAGGACTCTGCACTATGTCGGGTGGCCTGCTGAAGGCGCTGCGCAGCGACTCC
TACGTCGAACTGAGCCAGTACCGGGACCAGCACTTCCGGGGTGACAATGAAGAACAGGAG
AAGTTACTGAAGAAAAGCTGTACATTGTATGTTGGAAATCTTTCCTTTTATACAACTGAA
GAACAAATCTATGAACTCTTCAGCAAAAGTGGTGACATAAAGAAAATCATCATGGGCCTG
GATAAAATGAAGAAAACAGCGTGTGGGTTTTGCTTTGTGGAATACTATTCAAGAGCAGAT
GCTGAAAATGCCATGCGGTACATAAATGGAACTCGTCTGGATGACCGCATCATTCGCACA
GACTGGGATGCAGGCTTTAAAGAGGGCAGGCAGTATGGCCGTGGACGATCTGGGGGCCAG
GTACGAGATGAGTATCGACAGGACTATGATGCTGGGAGAGGTGGCTATGGAAAATTGGCC
CAAAACCAGTGAGTGGTGAAAGCCCCATCATGAAAAACTCACTCCTTTGGCCTGTTGAAT
CTGATGTGCATTACCGAAGGTCTGCAAACCTGCCTGTTTTTACCAAGCTTTAATCAATGT
TTCTACTGAGCCGGAAGCCTCTTCATGGTTTTCCTCTTCAAATTATTAAAGGACAGAATC
CAAAAGAATGCCTTTAATTCTATAGTGTTAGAATCCTGTGTCAGATTACCAGAATGATTT
CTGTTACCAGGTCAAAAAAATTGTGTTCCTTAGCAGCATATTTGGTGTATAATGTTGATC
CATCAGCCAAAAATAATACACTTCTTTTAGGAAGATTGGAAAAAGGATTTAAGTGTTTAC
CATGTTTGCATCTAACTAGGTTCATGGTCTTCTACCTTGAGACCTAGAATTACTATTTTA
AAATTTTTAAGTTTGCCTGACATAAAGTTTATTAAAGTAGAGCTTTGCTAGCTATGTAAT
GTAGCTTTGCAGTTAAATTAGGAACTGGTATTTGACAACTGAATTTTTTTCCATTTGAAT
TCTAATCTCTAAAGGCAAACTTAAGGAGTTCTTTTGTAGTGCGGTGGGTTGAGGATCCAT
CATTGTCACATGTCACAACATTGCAGTGGCATGGGTTCAATCCCTGGCCCGGAAACGTCA
CATGCCTCAGGTGCAAGTTAAAAAAAAAAAGGCAAACTTAAAGAGTCAAGAGAACTTCCT
AAATAGTGTAAAAATGATAAGCCGTAGTCCCAGGGGATACCACCTGCTTACATGCTTTAT
ATATCTGGAAATCAGGTATAGGACTTGAAGGGTATTTACTAAACACATTTTTCAAAAGAT
GCAGTTTAGCTAAAGCTAAAAAAA
|
|
154-344, gnl|bosTau2|chr1 (42929454-42929644) |
|
154-344, gnl|canFam2|chr11 (37984390-37984533) |
|
154-344, gnl|dasNov1|scaffold_11457 (52490-52639) |
|
154-344, gnl|echTel1|scaffold_297377 (10652-10498) |
|
154-344, gnl|Hg17|chr3 (198154619-198154429) |
|
154-344, gnl|hg17|chr9 (14463761-14463912) |
|
154-344, gnl|loxAfr1|scaffold_22224 (9558-9405) |
|
154-344, gnl|Mm7|chr16 (31628644-31628834) |
|
154-344, gnl|mm7|chr5 (33123543-33123697) |
|
154-344, gnl|monDom2|scaffold_21 (491184-491338) |
|
154-344, gnl|oryCun1|scaffold_203399 (117108-116952) |
|
154-344, gnl|panTro1|chr11_random (11449565-11449414) |
|
154-344, gnl|rheMac2|chr15 (62439063-62438912) |
|
154-344, gnl|rn3|chr17 (78881164-78881316) |
| |
|
479-1104, gnl|bosTau2|chr1 (42932528-42933160) |
|
479-1104, gnl|Hg17|chr3 (198152265-198151508) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
154-344, gnl|bosTau2|chr1 (42929454-42929644) |
|
154-344, gnl|canFam2|chr11 (37984390-37984533) |
|
154-344, gnl|dasNov1|scaffold_11457 (52490-52639) |
|
154-344, gnl|echTel1|scaffold_297377 (10652-10498) |
|
154-344, gnl|Hg17|chr3 (198154619-198154429) |
|
154-344, gnl|hg17|chr9 (14463761-14463912) |
|
154-344, gnl|loxAfr1|scaffold_22224 (9558-9405) |
|
154-344, gnl|Mm7|chr16 (31628644-31628834) |
|
154-344, gnl|mm7|chr5 (33123543-33123697) |
|
154-344, gnl|monDom2|scaffold_21 (491184-491338) |
|
154-344, gnl|oryCun1|scaffold_203399 (117108-116952) |
|
154-344, gnl|panTro1|chr11_random (11449565-11449414) |
|
154-344, gnl|rheMac2|chr15 (62439063-62438912) |
|
154-344, gnl|rn3|chr17 (78881164-78881316) |
| |
|
479-1104, gnl|bosTau2|chr1 (42932528-42933160) |
|
479-1104, gnl|Hg17|chr3 (198152265-198151508) |
|
mcp (0.511945) |
|
spl (0.286369) |
|
nca (0.273748) |
|
clu (0.239292) |
|
pgl (0.236967) |
|
cbl (0.229595) |
|
cty (0.20816) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
lin (0.145603) |
|
che (0.136314) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
eru (0.120048) |
|
med (0.116252) |
|
ecc (0.115035) |
|
mcp (0.511945) |
|
spl (0.286369) |
|
nca (0.273748) |
|
clu (0.239292) |
|
pgl (0.236967) |
|
cbl (0.229595) |
|
cty (0.20816) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
lin (0.145603) |
|
che (0.136314) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
eru (0.120048) |
|
med (0.116252) |
|
ecc (0.115035) |
