Non-Coding RNA Search

Ss1.1-Pig4-TMW8050E22.5

Sequence:


               
               GGAGATGGCCAGATTACTGCAATTCTGGATCAGAAGAACTATGTAGAAGAACTCAACAGA
CATCTGAATGCTACTGTAAACAACCTTCAGGCGAAAGTGGATGCATTAGAAAAATCCAAC
ACTAAATTGACAGAGGAGCTTGCAGTTGCAAACAACAGGATTATTACCTTGCAAGAAGAA
ATGGAACGCGTTAAAGAGGAAAGCTCCTACATAATGGAATCCAATCGGAAGGCTCCTAAA
CCAGACAGAACCTCCGAAGGGCAGGCACTGAGTGAAGCAAGAAAGCACTTAAAGGAGGAG
ACACAACTACGACTGGATGTTGAAAAAGAACTGGAGATCCAGATCAGCATGAGACAGGAG
ATGGAGCTGGCGATGAAGATGCTGGAGAAGGATGTCTGTGAGAAGCAGGACGCCCTGGTG
TCTCTGCGGCAGCAGTTGGATGACCTCAGGGCTCTGAAGCATGAACTTGCCTTTAAGCTG
CAGAGTTCAGACTTAGGAGTAAAACAGAAAAGTGAACTGAACAGTCGCTTGGAAGAGAAG
ACTAATCAGATGGCTGCTACCATTAAACAACTCGAACAAAGTGAAAAGGATTTGGTGAAA
CAGGCAAAGACCTTAAATAGTGCAGCAAATAAACTGATCCCAAAACATCATTAGGCAATT
TGGAGCTGGTCACCTCTCAAGTTGGATATCACAGCTTAATTATAGAAGGAAGAAATCTGA
AAGTTATTGCATTTATGCTCTGATTCTATATAAAATGTGTCACCAAAAATTGACTTTGAA
TTTGCTGGACTTAAAAAAAAAAAAAAAAAAAAGTTTCATAGGCTGTGTTTTTTTCTTCTT
CTTTATTTTCTTCCCAGAGTTAGAAAATTTAGTACAAGTTCTTAAAAATGCCAAATAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGATGGCCAGATTACTGCAATTCTGGATCAGAAGAACTATGTAGAAGAACTCAACAGA
CATCTGAATGCTACTGTAAACAACCTTCAGGCGAAAGTGGATGCATTAGAAAAATCCAAC
ACTAAATTGACAGAGGAGCTTGCAGTTGCAAACAACAGGATTATTACCTTGCAAGAAGAA
ATGGAACGCGTTAAAGAGGAAAGCTCCTACATAATGGAATCCAATCGGAAGGCTCCTAAA
CCAGACAGAACCTCCGAAGGGCAGGCACTGAGTGAAGCAAGAAAGCACTTAAAGGAGGAG
ACACAACTACGACTGGATGTTGAAAAAGAACTGGAGATCCAGATCAGCATGAGACAGGAG
ATGGAGCTGGCGATGAAGATGCTGGAGAAGGATGTCTGTGAGAAGCAGGACGCCCTGGTG
TCTCTGCGGCAGCAGTTGGATGACCTCAGGGCTCTGAAGCATGAACTTGCCTTTAAGCTG
CAGAGTTCAGACTTAGGAGTAAAACAGAAAAGTGAACTGAACAGTCGCTTGGAAGAGAAG
ACTAATCAGATGGCTGCTACCATTAAACAACTCGAACAAAGTGAAAAGGATTTGGTGAAA
CAGGCAAAGACCTTAAATAGTGCAGCAAATAAACTGATCCCAAAACATCATTAGGCAATT
TGGAGCTGGTCACCTCTCAAGTTGGATATCACAGCTTAATTATAGAAGGAAGAAATCTGA
AAGTTATTGCATTTATGCTCTGATTCTATATAAAATGTGTCACCAAAAATTGACTTTGAA
TTTGCTGGACTTAAAAAAAAAAAAAAAAAAAAGTTTCATAGGCTGTGTTTTTTTCTTCTT
CTTTATTTTCTTCCCAGAGTTAGAAAATTTAGTACAAGTTCTTAAAAATGCCAAATAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61843257|ref|XP_611994.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843257|ref|XP_611994.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               322-441, - strand, RNAz p=0.640455

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-441, - strand, RNAz p=0.640455

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-581, gnl|bosTau2|chr19 (6527200-6527780)
               

               
               1-581, gnl|Hg17|chr5 (105780269-105779699)
               

               
               1-581, gnl|Mm7|chr5 (88567740-88583387)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-581, gnl|bosTau2|chr19 (6527200-6527780)
               

               
               1-581, gnl|Hg17|chr5 (105780269-105779699)
               

               
               1-581, gnl|Mm7|chr5 (88567740-88583387)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbe (0.478469)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)

	1-581, gnl\|bosTau2\|chr19 (6527200-6527780)
	1-581, gnl\|Hg17\|chr5 (105780269-105779699)
	1-581, gnl\|Mm7\|chr5 (88567740-88583387)

	cbe (0.478469)
	fbs (0.175346)
	cki (0.165235)
	fco (0.157208)
	hyp (0.142837)
	cbr (0.127975)
	sug (0.127291)
	ebs (0.118301)