Non-Coding RNA Search

Ss1.1-Pig4-TMW8050F01.3

Sequence:


               
               CCACTCTTCCCGCCTCTGGGACCTGCCTGATTTTCCAGGAGGTCCTGGCTGGGAGGACTC
TGTGAGAGGACTAGGTGTGAGGGAGACAACAGCTGGGATCCTTGCCAGAGCCCAAGACCC
CGGCTCGGGGCAGAGACACGGCTGCCCAGCAGCCTGGCTCACCCTTTTCCCAGAACTTGT
TGCTGGTGGTTCAGCCCCAACTTGATCCCTTCACAGCCTGGGGCCCAGCAGACACTGCCC
AGGACACCTGATGCATTCCCTCTTGCCCGTCCCTCTGCCTTCCCTCCCGGGGCCCTACTA
CTTGAATCACTGCATCTAATTTGTCTAAGCGGCAGGACCTGGGTCCCCTGCCCTGTCTTT
GATCTTGTGATGAAGGTCAGAAGAGCACAGGGACCATGTCCAGTTTAGGCTGAGCTCCCC
AGTGGGATACTGCCCAAGGGAAAAAACTGCCCTTGGCAATTCCCCCTCCCTAGACTCAAG
GGAGGTCCCCAGAGAGCCAGAGACCCCCGGGCTTCCTGCTCGGGAAGCTGCCCCCAGGAC
TTTGGATACTTACAGAATGGCTGTTTGAGTTCAGCTGGTCTCACTCCAAGGGTTAGAATG
TTAGTCTGCTTTTGTTTTTTCATTTGTTTTGTTCTTTGAATCAGTGCTGTTGATGACAAG
TTGTCTTTAATAAATCATGTGTTCTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTCTTCCCGCCTCTGGGACCTGCCTGATTTTCCAGGAGGTCCTGGCTGGGAGGACTC
TGTGAGAGGACTAGGTGTGAGGGAGACAACAGCTGGGATCCTTGCCAGAGCCCAAGACCC
CGGCTCGGGGCAGAGACACGGCTGCCCAGCAGCCTGGCTCACCCTTTTCCCAGAACTTGT
TGCTGGTGGTTCAGCCCCAACTTGATCCCTTCACAGCCTGGGGCCCAGCAGACACTGCCC
AGGACACCTGATGCATTCCCTCTTGCCCGTCCCTCTGCCTTCCCTCCCGGGGCCCTACTA
CTTGAATCACTGCATCTAATTTGTCTAAGCGGCAGGACCTGGGTCCCCTGCCCTGTCTTT
GATCTTGTGATGAAGGTCAGAAGAGCACAGGGACCATGTCCAGTTTAGGCTGAGCTCCCC
AGTGGGATACTGCCCAAGGGAAAAAACTGCCCTTGGCAATTCCCCCTCCCTAGACTCAAG
GGAGGTCCCCAGAGAGCCAGAGACCCCCGGGCTTCCTGCTCGGGAAGCTGCCCCCAGGAC
TTTGGATACTTACAGAATGGCTGTTTGAGTTCAGCTGGTCTCACTCCAAGGGTTAGAATG
TTAGTCTGCTTTTGTTTTTTCATTTGTTTTGTTCTTTGAATCAGTGCTGTTGATGACAAG
TTGTCTTTAATAAATCATGTGTTCTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-119, - strand, RNAz p=0.939501
               

               
               302-527, - strand, RNAz p=0.999992

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-119, - strand, RNAz p=0.939501
               

               
               302-527, - strand, RNAz p=0.999992

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               80-240, - strand, RNAmicro p=0.999175
               

               
               345-432, + strand, RNAmicro p=0.996546
               

               
               442-563, - strand, RNAmicro p=0.942471

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               80-240, - strand, RNAmicro p=0.999175
               

               
               345-432, + strand, RNAmicro p=0.996546
               

               
               442-563, - strand, RNAmicro p=0.942471

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               304-511, DB818419 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|DB818419.1|), blast E-value=0, identity=91.83% 
               

               
               332-527, PADT08110O7_A02F porcine adipose tissue cDNA library (PADT) Sus 
(gb|EB423147.1|), blast E-value=0, identity=98.98%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               304-511, DB818419 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|DB818419.1|), blast E-value=0, identity=91.83% 
               

               
               332-527, PADT08110O7_A02F porcine adipose tissue cDNA library (PADT) Sus 
(gb|EB423147.1|), blast E-value=0, identity=98.98%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-690, gnl|bosTau2|chr11 (78582658-78583330)
               

               
               5-690, gnl|Hg17|chr9 (128651548-128652258)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-690, gnl|bosTau2|chr11 (78582658-78583330)
               

               
               5-690, gnl|Hg17|chr9 (128651548-128652258)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               che (0.136314)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	5-119, - strand, RNAz p=0.939501
	302-527, - strand, RNAz p=0.999992

	80-240, - strand, RNAmicro p=0.999175
	345-432, + strand, RNAmicro p=0.996546
	442-563, - strand, RNAmicro p=0.942471

	304-511, DB818419 full-length enriched swine cDNA library, adult thymus Sus (dbj\|DB818419.1\|), blast E-value=0, identity=91.83%
	332-527, PADT08110O7_A02F porcine adipose tissue cDNA library (PADT) Sus (gb\|EB423147.1\|), blast E-value=0, identity=98.98%

	5-690, gnl\|bosTau2\|chr11 (78582658-78583330)
	5-690, gnl\|Hg17\|chr9 (128651548-128652258)