Non-Coding RNA Search

Ss1.1-Pig4-TMW8050F06.3

Sequence:


               
               CCCATCTCGCCACTCGCAAGATTTCCTAGCTGGCACCGCCCAGGCTTCCTCGAGGCCACA
CACAGACCTTGCAGGAATGGTCCAGGGACTTCTCTACAGACCCATTCCACCTTGGAGTGT
GAAGGCCGAGAGCAGAGCGAGGAAGAGAATGTGCAGACGTTGGGGGAAAGCTTCTAAAAG
ATACTTTCACTGCATCAAAAGAGCGTGCCAATCTATTTTTGTATCCGCTGTCGAAAGTGC
ACTTTCCCCCTGGGGGCGGATGAGCGAGGGTGAGCGTGTGTGTGTCTGAGATGCCGCATC
AGCCCTCCACCTCCAGGGCCAGCCCCACCCACTACAGAACTGACCTCAGCCAGGGGTCAG
GAGCCAGGCTGACCTTCAGCAATTATTCCAGACCATCTCTGGGTAACAGTCACTCCGTAC
CAGATTGACATCGTCTGCCCTTAGAAAATGACACGATTTCTGTTACTGCTCTTGCCACCA
TTGGGACGAAGAAGACAGTTCTCACTGTCGGATGGACTGTGGGGAACGGCGTGGCATATG
GCACTCTGTCCCTTTCCACTGTCTCGCCCTGTGCGTACATCGAACCTGCACACTTCCCCC
CTTGTGGAGATGCTGGGGTTGGGCTCCGTGGTGTGCATTCCTGTGCTCTATGTTAGAGTG
CATCATGGGCACATTTATTGTGCTATATATAGACATATACATATATATAAAGCATTTTAT
AAAATCCAGAATAGGGGAAAGGCACATGATTATTGTTTTGAGGCTTTGACAACTGGGACA
AACTGCGTCTTGAGCTGTGGTTGAGTCCATCAAAGAGGCAGCAACTCTTATTGCCACGTC
CCCAGGGCTGTTCGTGCAGTTTTAATTATAACTTGTACCGATTTGCTGGGATGACCCAAA
AGGAGGCACCTTACCATGCTGTCACCTTGTAGCTGCGAGAGGTGCCCGCTGGGGTTCACC
AGACTGACAGAAACCTGTGGCCCTGTAAAAAGAATTAAAATATTTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCATCTCGCCACTCGCAAGATTTCCTAGCTGGCACCGCCCAGGCTTCCTCGAGGCCACA
CACAGACCTTGCAGGAATGGTCCAGGGACTTCTCTACAGACCCATTCCACCTTGGAGTGT
GAAGGCCGAGAGCAGAGCGAGGAAGAGAATGTGCAGACGTTGGGGGAAAGCTTCTAAAAG
ATACTTTCACTGCATCAAAAGAGCGTGCCAATCTATTTTTGTATCCGCTGTCGAAAGTGC
ACTTTCCCCCTGGGGGCGGATGAGCGAGGGTGAGCGTGTGTGTGTCTGAGATGCCGCATC
AGCCCTCCACCTCCAGGGCCAGCCCCACCCACTACAGAACTGACCTCAGCCAGGGGTCAG
GAGCCAGGCTGACCTTCAGCAATTATTCCAGACCATCTCTGGGTAACAGTCACTCCGTAC
CAGATTGACATCGTCTGCCCTTAGAAAATGACACGATTTCTGTTACTGCTCTTGCCACCA
TTGGGACGAAGAAGACAGTTCTCACTGTCGGATGGACTGTGGGGAACGGCGTGGCATATG
GCACTCTGTCCCTTTCCACTGTCTCGCCCTGTGCGTACATCGAACCTGCACACTTCCCCC
CTTGTGGAGATGCTGGGGTTGGGCTCCGTGGTGTGCATTCCTGTGCTCTATGTTAGAGTG
CATCATGGGCACATTTATTGTGCTATATATAGACATATACATATATATAAAGCATTTTAT
AAAATCCAGAATAGGGGAAAGGCACATGATTATTGTTTTGAGGCTTTGACAACTGGGACA
AACTGCGTCTTGAGCTGTGGTTGAGTCCATCAAAGAGGCAGCAACTCTTATTGCCACGTC
CCCAGGGCTGTTCGTGCAGTTTTAATTATAACTTGTACCGATTTGCTGGGATGACCCAAA
AGGAGGCACCTTACCATGCTGTCACCTTGTAGCTGCGAGAGGTGCCCGCTGGGGTTCACC
AGACTGACAGAAACCTGTGGCCCTGTAAAAAGAATTAAAATATTTTAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               298-414, - strand, RNAz p=0.865098
               

               
               593-740, + strand, RNAz p=0.997552

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-414, - strand, RNAz p=0.865098
               

               
               593-740, + strand, RNAz p=0.997552

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC037218, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC037218, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-1007, gnl|bosTau2|chr24 (23615182-23614195)
               

               
               25-1007, gnl|Hg17|chr18 (19091599-19092604)
               

               
               25-1007, gnl|Mm7|chr18 (12294734-12295548)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-1007, gnl|bosTau2|chr24 (23615182-23614195)
               

               
               25-1007, gnl|Hg17|chr18 (19091599-19092604)
               

               
               25-1007, gnl|Mm7|chr18 (12294734-12295548)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lin (0.145603)
               

               
               csk (0.140746)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               jej (0.0989218)

	298-414, - strand, RNAz p=0.865098
	593-740, + strand, RNAz p=0.997552

	25-1007, gnl\|bosTau2\|chr24 (23615182-23614195)
	25-1007, gnl\|Hg17\|chr18 (19091599-19092604)
	25-1007, gnl\|Mm7\|chr18 (12294734-12295548)