Ss1.1-Pig4-TMW8050F16.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGGTCGGGCTGTGTGTCAGCAGCCCAGCGGGCACTCGGGCGGGACATGGCGGGTTGT GTGGCCCGGCGGGCCTTGACCGTGGGCGGTCGCTGGTGGTCCCGGTCGCTGACCGGGGCT CGTGGGCCGAGGCCGCTGTGTGCAGCGGGTGGAGCTGGGGCCTTAACACCAGCGGCGACC ACGACGACGCGGAGGCACCTCTCGTCCCGAAACCGACCAGAAGGCAAAGTTTTGGAGACC GTTGGTGTGTTTGAGGTGCCAAAACAGAATGGAAAATATGAGACTGGGCAGCTTTTCCTA CACAGTGTTTTTGGCTACCGAGGTGTCGTCCTGTTTCCCTGGCAGGCCAGACTGTATGAC CGGGATGTGGCTTCTGCAGCTCCAGAAAAAGCAGAGAATCCTGCCGGCCACGGCTCCAAG GAGGTGAAAGGCAAAACTCACACTTACTATCAGGTGCTGATTGATGCCCGAGACTGTCCA CATATATCTCAGAGATCTCAGACAGAAGCTGTGACTTTCTTGGCTAACCATGATGACAGC CGGGCCCTCTATGCCATCCCGGGTCTGGACTATGTCAGCCATGAAGACATCCTCCCCTAC AGCTCCACTGATCAGGTTCCCATCCAGCACGAGCTCTTCGAAAGATTTCTGCTGTATGAC CAGACAAAAGCACCCCCTTTTGTGGCTCGGGAGACACTACGGGCCTGGCAAGAGAAGAAT CATCCCTGGCTGGAGCTCTCCGATGTCCACCGTGAAACAACTGAGAACATCCGTGTCACC GTCATCCCCTTCTACATGGGCATGAGGGAGGCCCAGAATTCCCATGTCTACTGGTGGCGC TACTGCATCCGCCTGGAGAACCTCGACAGTGACGTGGTACAGCTCCGGGAGCGACACTGG AGGATATTCAGTCTATCTGGCACCTTGGAGACAGTGCGAGGCCGAGGGGTGGTGGGCAGG GAACCAGTGTTATCCAAGGAGCAGCCCGCATTCCAGTACAGCAGCCACGTCTCCCTGCAG GCTTCCAGCGGGCACATGTGGGGCACGTTCCGCTTTGAGAGGCCTGACGGTTCCCACTTT GATGTTCGGATCCCTCCTTTCTCCCTCGAAAGCAATAAAGATGAGAAGACACCACCTTCA GGCCTTCACTGGTAGGCCGAGACCCTGAGCACCCAGACTCAGACCCTGAAGAACAGCTCT CATCCCACAACTGCTGCAGACCTCTCTCCATCACGGGCCACAGGGGATCTCTTAATCACA TGCACCATTTGATTGTGGGGTTCTAATTTTGGTGGGTGGAGCATACCTGTTTTCTCCAGC AGCCCCACGTAGGACTCCTCCAAGATTGGCCTCCCCTGTAAGCCCTGCCTATGTTGTGTT CCCGTAAACCTTTCCATCAGGAACTCTGTGTTCAGCTGCCACAGGCCTTGGGGAGTTTCC TAGCCTGTTACACAAGTTGTTTAGAATGTGAGGTTTGGTCAATAAACCAGTGCACGCTTG GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGGTCGGGCTGTGTGTCAGCAGCCCAGCGGGCACTCGGGCGGGACATGGCGGGTTGT GTGGCCCGGCGGGCCTTGACCGTGGGCGGTCGCTGGTGGTCCCGGTCGCTGACCGGGGCT CGTGGGCCGAGGCCGCTGTGTGCAGCGGGTGGAGCTGGGGCCTTAACACCAGCGGCGACC ACGACGACGCGGAGGCACCTCTCGTCCCGAAACCGACCAGAAGGCAAAGTTTTGGAGACC GTTGGTGTGTTTGAGGTGCCAAAACAGAATGGAAAATATGAGACTGGGCAGCTTTTCCTA CACAGTGTTTTTGGCTACCGAGGTGTCGTCCTGTTTCCCTGGCAGGCCAGACTGTATGAC CGGGATGTGGCTTCTGCAGCTCCAGAAAAAGCAGAGAATCCTGCCGGCCACGGCTCCAAG GAGGTGAAAGGCAAAACTCACACTTACTATCAGGTGCTGATTGATGCCCGAGACTGTCCA CATATATCTCAGAGATCTCAGACAGAAGCTGTGACTTTCTTGGCTAACCATGATGACAGC CGGGCCCTCTATGCCATCCCGGGTCTGGACTATGTCAGCCATGAAGACATCCTCCCCTAC AGCTCCACTGATCAGGTTCCCATCCAGCACGAGCTCTTCGAAAGATTTCTGCTGTATGAC CAGACAAAAGCACCCCCTTTTGTGGCTCGGGAGACACTACGGGCCTGGCAAGAGAAGAAT CATCCCTGGCTGGAGCTCTCCGATGTCCACCGTGAAACAACTGAGAACATCCGTGTCACC GTCATCCCCTTCTACATGGGCATGAGGGAGGCCCAGAATTCCCATGTCTACTGGTGGCGC TACTGCATCCGCCTGGAGAACCTCGACAGTGACGTGGTACAGCTCCGGGAGCGACACTGG AGGATATTCAGTCTATCTGGCACCTTGGAGACAGTGCGAGGCCGAGGGGTGGTGGGCAGG GAACCAGTGTTATCCAAGGAGCAGCCCGCATTCCAGTACAGCAGCCACGTCTCCCTGCAG GCTTCCAGCGGGCACATGTGGGGCACGTTCCGCTTTGAGAGGCCTGACGGTTCCCACTTT GATGTTCGGATCCCTCCTTTCTCCCTCGAAAGCAATAAAGATGAGAAGACACCACCTTCA GGCCTTCACTGGTAGGCCGAGACCCTGAGCACCCAGACTCAGACCCTGAAGAACAGCTCT CATCCCACAACTGCTGCAGACCTCTCTCCATCACGGGCCACAGGGGATCTCTTAATCACA TGCACCATTTGATTGTGGGGTTCTAATTTTGGTGGGTGGAGCATACCTGTTTTCTCCAGC AGCCCCACGTAGGACTCCTCCAAGATTGGCCTCCCCTGTAAGCCCTGCCTATGTTGTGTT CCCGTAAACCTTTCCATCAGGAACTCTGTGTTCAGCTGCCACAGGCCTTGGGGAGTTTCC TAGCCTGTTACACAAGTTGTTTAGAATGTGAGGTTTGGTCAATAAACCAGTGCACGCTTG GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1347-1465, - strand, RNAz p=0.965022 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1347-1465, - strand, RNAz p=0.965022 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 1-209, gnl|bosTau2|chr19 (13384135-13383927) | |
| 1-209, gnl|Hg17|chr17 (23708648-23708441) | |
| 1-209, gnl|Mm7|chr11 (78593839-78594047) | |
| 289-389, gnl|bosTau2|chr19 (13381674-13381574) | |
| 289-389, gnl|canFam2|chr9 (45929922-45930032) | |
| 289-389, gnl|danRer3|chr15 (31994852-31994956) | |
| 289-389, gnl|dasNov1|scaffold_166057 (5032-5127) | |
| 289-389, gnl|echTel1|scaffold_311281 (8078-7964) | |
| 289-389, gnl|fr1|chrUn (98472453-98472346) | |
| 289-389, gnl|galGal2|chr19 (5289558-5289660) | |
| 289-389, gnl|hg17|chr17 (23705629-23705740) | |
| 289-389, gnl|Hg17|chr17 (23705741-23705641) | |
| 289-389, gnl|loxAfr1|scaffold_60109 (31470-31359) | |
| 289-389, gnl|mm7|chr11 (78596774-78596664) | |
| 289-389, gnl|Mm7|chr11 (78596660-78596760) | |
| 289-389, gnl|monDom2|scaffold_44 (14148730-14148840) | |
| 289-389, gnl|oryCun1|scaffold_195734 (26097-26000) | |
| 289-389, gnl|panTro1|chr19 (27043200-27043310) | |
| 289-389, gnl|rheMac2|chr16 (23536938-23537048) | |
| 289-389, gnl|rn3|chr10 (64638301-64638189) | |
| 289-389, gnl|tetNig1|chr16 (6848363-6848255) | |
| 289-389, gnl|xenTro1|scaffold_50 (1780556-1780446) | |
| 669-808, gnl|bosTau2|chr19 (13379805-13379666) | |
| 669-808, gnl|canFam2|chr9 (45927515-45927689) | |
| 669-808, gnl|danRer3|chr15 (31991314-31991462) | |
| 669-808, gnl|dasNov1|scaffold_166057 (4620-4757) | |
| 669-808, gnl|echTel1|scaffold_311281 (10116-9938) | |
| 669-808, gnl|fr1|chrUn (98473229-98473057) | |
| 669-808, gnl|galGal2|chr19 (5287463-5287636) | |
| 669-808, gnl|hg17|chr17 (23702804-23702982) | |
| 669-808, gnl|Hg17|chr17 (23702955-23702816) | |
| 669-808, gnl|loxAfr1|scaffold_60109 (33638-33460) | |
| 669-808, gnl|mm7|chr11 (78599798-78599624) | |
| 669-808, gnl|Mm7|chr11 (78599646-78599785) | |
| 669-808, gnl|monDom2|scaffold_44 (14147044-14147218) | |
| 669-808, gnl|oryCun1|scaffold_205879 (50312-50490) | |
| 669-808, gnl|panTro1|chr19 (27040374-27040552) | |
| 669-808, gnl|rheMac2|chr16 (23534384-23534562) | |
| 669-808, gnl|rn3|chr10 (64641119-64640941) | |
| 669-808, gnl|tetNig1|chr16 (6849103-6848944) | |
| 669-808, gnl|xenTro1|scaffold_50 (1782949-1782790) | |
| 834-961, gnl|bosTau2|chr19 (13378628-13378501) | |
| 834-961, gnl|canFam2|chr9 (45926363-45926523) | |
| 834-961, gnl|danRer3|chr15 (31988273-31988411) | |
| 834-961, gnl|dasNov1|scaffold_32457 (6819-6979) | |
| 834-961, gnl|echTel1|scaffold_311281 (10938-10779) | |
| 834-961, gnl|fr1|chrUn (98473605-98473458) | |
| 834-961, gnl|galGal2|chr19 (5286126-5286274) | |
| 834-961, gnl|hg17|chr17 (23701575-23701738) | |
| 834-961, gnl|Hg17|chr17 (23701717-23701590) | |
| 834-961, gnl|loxAfr1|scaffold_70953 (25160-25000) | |
| 834-961, gnl|mm7|chr11 (78600898-78600745) | |
| 834-961, gnl|Mm7|chr11 (78600754-78600881) | |
| 834-961, gnl|monDom2|scaffold_44 (14146133-14146331) | |
| 834-961, gnl|oryCun1|scaffold_205879 (48190-48350) | |
| 834-961, gnl|panTro1|chr19 (27039129-27039291) | |
| 834-961, gnl|rheMac2|chr16 (23533172-23533334) | |
| 834-961, gnl|rn3|chr10 (64642183-64642030) | |
| 834-961, gnl|tetNig1|chr16 (6849407-6849263) | |
| 834-961, gnl|xenTro1|scaffold_50 (1784470-1784307) | |
| 1040-1502, gnl|bosTau2|chr19 (13376782-13376329) | |
| 1040-1502, gnl|Hg17|chr17 (23699385-23698943) | |
| 1040-1502, gnl|Mm7|chr11 (78603368-78603746) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-209, gnl|bosTau2|chr19 (13384135-13383927) | |
| 1-209, gnl|Hg17|chr17 (23708648-23708441) | |
| 1-209, gnl|Mm7|chr11 (78593839-78594047) | |
| 289-389, gnl|bosTau2|chr19 (13381674-13381574) | |
| 289-389, gnl|canFam2|chr9 (45929922-45930032) | |
| 289-389, gnl|danRer3|chr15 (31994852-31994956) | |
| 289-389, gnl|dasNov1|scaffold_166057 (5032-5127) | |
| 289-389, gnl|echTel1|scaffold_311281 (8078-7964) | |
| 289-389, gnl|fr1|chrUn (98472453-98472346) | |
| 289-389, gnl|galGal2|chr19 (5289558-5289660) | |
| 289-389, gnl|hg17|chr17 (23705629-23705740) | |
| 289-389, gnl|Hg17|chr17 (23705741-23705641) | |
| 289-389, gnl|loxAfr1|scaffold_60109 (31470-31359) | |
| 289-389, gnl|mm7|chr11 (78596774-78596664) | |
| 289-389, gnl|Mm7|chr11 (78596660-78596760) | |
| 289-389, gnl|monDom2|scaffold_44 (14148730-14148840) | |
| 289-389, gnl|oryCun1|scaffold_195734 (26097-26000) | |
| 289-389, gnl|panTro1|chr19 (27043200-27043310) | |
| 289-389, gnl|rheMac2|chr16 (23536938-23537048) | |
| 289-389, gnl|rn3|chr10 (64638301-64638189) | |
| 289-389, gnl|tetNig1|chr16 (6848363-6848255) | |
| 289-389, gnl|xenTro1|scaffold_50 (1780556-1780446) | |
| 669-808, gnl|bosTau2|chr19 (13379805-13379666) | |
| 669-808, gnl|canFam2|chr9 (45927515-45927689) | |
| 669-808, gnl|danRer3|chr15 (31991314-31991462) | |
| 669-808, gnl|dasNov1|scaffold_166057 (4620-4757) | |
| 669-808, gnl|echTel1|scaffold_311281 (10116-9938) | |
| 669-808, gnl|fr1|chrUn (98473229-98473057) | |
| 669-808, gnl|galGal2|chr19 (5287463-5287636) | |
| 669-808, gnl|hg17|chr17 (23702804-23702982) | |
| 669-808, gnl|Hg17|chr17 (23702955-23702816) | |
| 669-808, gnl|loxAfr1|scaffold_60109 (33638-33460) | |
| 669-808, gnl|mm7|chr11 (78599798-78599624) | |
| 669-808, gnl|Mm7|chr11 (78599646-78599785) | |
| 669-808, gnl|monDom2|scaffold_44 (14147044-14147218) | |
| 669-808, gnl|oryCun1|scaffold_205879 (50312-50490) | |
| 669-808, gnl|panTro1|chr19 (27040374-27040552) | |
| 669-808, gnl|rheMac2|chr16 (23534384-23534562) | |
| 669-808, gnl|rn3|chr10 (64641119-64640941) | |
| 669-808, gnl|tetNig1|chr16 (6849103-6848944) | |
| 669-808, gnl|xenTro1|scaffold_50 (1782949-1782790) | |
| 834-961, gnl|bosTau2|chr19 (13378628-13378501) | |
| 834-961, gnl|canFam2|chr9 (45926363-45926523) | |
| 834-961, gnl|danRer3|chr15 (31988273-31988411) | |
| 834-961, gnl|dasNov1|scaffold_32457 (6819-6979) | |
| 834-961, gnl|echTel1|scaffold_311281 (10938-10779) | |
| 834-961, gnl|fr1|chrUn (98473605-98473458) | |
| 834-961, gnl|galGal2|chr19 (5286126-5286274) | |
| 834-961, gnl|hg17|chr17 (23701575-23701738) | |
| 834-961, gnl|Hg17|chr17 (23701717-23701590) | |
| 834-961, gnl|loxAfr1|scaffold_70953 (25160-25000) | |
| 834-961, gnl|mm7|chr11 (78600898-78600745) | |
| 834-961, gnl|Mm7|chr11 (78600754-78600881) | |
| 834-961, gnl|monDom2|scaffold_44 (14146133-14146331) | |
| 834-961, gnl|oryCun1|scaffold_205879 (48190-48350) | |
| 834-961, gnl|panTro1|chr19 (27039129-27039291) | |
| 834-961, gnl|rheMac2|chr16 (23533172-23533334) | |
| 834-961, gnl|rn3|chr10 (64642183-64642030) | |
| 834-961, gnl|tetNig1|chr16 (6849407-6849263) | |
| 834-961, gnl|xenTro1|scaffold_50 (1784470-1784307) | |
| 1040-1502, gnl|bosTau2|chr19 (13376782-13376329) | |
| 1040-1502, gnl|Hg17|chr17 (23699385-23698943) | |
| 1040-1502, gnl|Mm7|chr11 (78603368-78603746) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| hlv (0.557025) | |
| fhi (0.508733) | |
| cty (0.41632) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| che (0.272628) | |
| cov (0.264306) | |
| pgl (0.236967) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| csp (0.161186) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.557025) | |
| fhi (0.508733) | |
| cty (0.41632) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| che (0.272628) | |
| cov (0.264306) | |
| pgl (0.236967) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| csp (0.161186) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |