Non-Coding RNA Search

Ss1.1-Pig4-TMW8050F21.5

Sequence:


               
               GCACCGCGAGCCTGTGTACCCGCAGCCTCCCTTCAGCTGCTCTGACCTGCCTCGAGAGGA
CAAAAAGCGAGTGCAGTTCGTGCCGGAGCCCTGCACCCTCTCGGTAAATGGGATGATCTT
TGGCTTAACGTCCACCGATCTGCTGTTTCACATGGGGGCCGAGGAGATCAGCAGTTCTTC
CGGAACTTCGGACAGATTCAGCCGGATCCTCAAGCACATCCTGACCCAGAGGAGCTACTA
CCCGCTCTACCCTCCCCAGGAGGACGTGGCCATCGACTATGAGCATTTCTATGCCCACGC
ACAGCTGCCCGTCACCCCCGATGTCTTCGTGGCGCCCTCAGAGCTGAGGTACTTTGTGAA
GGACATCCTCGGCTGCATCTGCGTGAACCCCGGGCGCCTCACCAAAGGGCAGGTGGGGGG
CACCTTCGGCCGACTCTACCTCAGGAGGCAGCCAGCCGGCGACGGGAGGCGGAGTCCCTG
CGCTGCTGCCCAGGTGGTCAGGATCTGAGGCCAGGCCCCTCGTCATGCCCACGTGTGGGC
CTCACAGGCACTGAGAGCCCCGGAGTGGCCCTTCGACAAGATGCCACCTGCAGAGGGAGA
GGAGGCAGCCCGGCGGCGAGGAGAGGGCTGCGGGCAGCTGGACCCCGACTCTGAGTCAAA
CTCCCCTGGAAGAAAGCTGTTGGTTCCCCTCGGACACTCGGAGTTGGAAGGGAACGCCAA
GGCTCTGCAGATGCCGACATGAATCGGAGAAACAACTTTTGGAGAAATAAAAATAAATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCGCGAGCCTGTGTACCCGCAGCCTCCCTTCAGCTGCTCTGACCTGCCTCGAGAGGA
CAAAAAGCGAGTGCAGTTCGTGCCGGAGCCCTGCACCCTCTCGGTAAATGGGATGATCTT
TGGCTTAACGTCCACCGATCTGCTGTTTCACATGGGGGCCGAGGAGATCAGCAGTTCTTC
CGGAACTTCGGACAGATTCAGCCGGATCCTCAAGCACATCCTGACCCAGAGGAGCTACTA
CCCGCTCTACCCTCCCCAGGAGGACGTGGCCATCGACTATGAGCATTTCTATGCCCACGC
ACAGCTGCCCGTCACCCCCGATGTCTTCGTGGCGCCCTCAGAGCTGAGGTACTTTGTGAA
GGACATCCTCGGCTGCATCTGCGTGAACCCCGGGCGCCTCACCAAAGGGCAGGTGGGGGG
CACCTTCGGCCGACTCTACCTCAGGAGGCAGCCAGCCGGCGACGGGAGGCGGAGTCCCTG
CGCTGCTGCCCAGGTGGTCAGGATCTGAGGCCAGGCCCCTCGTCATGCCCACGTGTGGGC
CTCACAGGCACTGAGAGCCCCGGAGTGGCCCTTCGACAAGATGCCACCTGCAGAGGGAGA
GGAGGCAGCCCGGCGGCGAGGAGAGGGCTGCGGGCAGCTGGACCCCGACTCTGAGTCAAA
CTCCCCTGGAAGAAAGCTGTTGGTTCCCCTCGGACACTCGGAGTTGGAAGGGAACGCCAA
GGCTCTGCAGATGCCGACATGAATCGGAGAAACAACTTTTGGAGAAATAAAAATAAATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12861304|dbj|BAB32165.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12861304|dbj|BAB32165.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               66-174, gnl|bosTau2|chr29 (34421407-34421515)
               

               
               66-174, gnl|Hg17|chr11 (64818591-64818699)
               

               
               66-174, gnl|Mm7|chr19 (5838137-5838029)
               


               
               360-715, gnl|bosTau2|chr29 (34423882-34424230)
               

               
               360-715, gnl|Hg17|chr11 (64821165-64821560)
               

               
               360-715, gnl|Mm7|chr19 (5835825-5835439)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-174, gnl|bosTau2|chr29 (34421407-34421515)
               

               
               66-174, gnl|Hg17|chr11 (64818591-64818699)
               

               
               66-174, gnl|Mm7|chr19 (5838137-5838029)
               


               
               360-715, gnl|bosTau2|chr29 (34423882-34424230)
               

               
               360-715, gnl|Hg17|chr11 (64821165-64821560)
               

               
               360-715, gnl|Mm7|chr19 (5835825-5835439)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ill (0.175593)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	66-174, gnl\|bosTau2\|chr29 (34421407-34421515)
	66-174, gnl\|Hg17\|chr11 (64818591-64818699)
	66-174, gnl\|Mm7\|chr19 (5838137-5838029)

	360-715, gnl\|bosTau2\|chr29 (34423882-34424230)
	360-715, gnl\|Hg17\|chr11 (64821165-64821560)
	360-715, gnl\|Mm7\|chr19 (5835825-5835439)

	ill (0.175593)
	nmm (0.132802)
	cov (0.132153)
	med (0.116252)
	nbm (0.0993246)