Non-Coding RNA Search

Ss1.1-Pig4-TMW8050F23.3

Sequence:


               
               CTCCCTCTCTTTAGCTTTCACTGTGTTTGATATCAAGAGTATGAAATGTGAATTCCACGG
TTGAAGAGGGGAAGAGTCACCTTTCGCAAACTTCGTTGTTCTCTTCTTTGGAAGGGAAAT
TAGTGTTCTAGGAGATCGAGTCCCTTTGCTAATGAAACTTGAAACCCTGTTAAGCATTGG
CACACAAAAAAAAAGATGTGAGAGGTGTTTTCTAAGTCATCTGTTGTACTAAGAGGGCTC
AGGGCTGTATTCACAGAGCTGCTGGCAGTGCAAATAGCTTTGAATTATCCTTGGTTCTCT
ATCCTGAATTGTCAAAGCTCTTTGTTGCCTTTGTGAATAGCAGTCCATTAAGAAGAGGTT
CGTCCCTGTGAGAGCAGACTGCTGTCCTGGGACAGGACCAAATGCAAGTGTCTTTATAGG
AGAATGGGTCTTGAAACTTGTGTTTTCTTTCTTGTAATCTAGGGATCATAGACGGTATTT
CTATGTAAACGAACAGTCGGGAGAGTCTCAGTGGGAGTTCCCAGATGGTGAGGAGGAAGA
GGAAGAAAGCCAAGCACAGGAGAGTAGAGACGAGACGTCGAAACAGACCTTAAAAGACAA
AACTGGCACTGACTCAAATTCTACAGAATCTTCTGAAAATTCCACAGGTGGGACGATTTA
CTCTGGGTTACTTGGAGAGAAGTTATTTTAGAGGAAGGAAAAAAAACTTGTATTGATATA
TAAAAGAATTTAAATCTTAATCACATAAATTTCTAACTGAAAAATAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCTCTCTTTAGCTTTCACTGTGTTTGATATCAAGAGTATGAAATGTGAATTCCACGG
TTGAAGAGGGGAAGAGTCACCTTTCGCAAACTTCGTTGTTCTCTTCTTTGGAAGGGAAAT
TAGTGTTCTAGGAGATCGAGTCCCTTTGCTAATGAAACTTGAAACCCTGTTAAGCATTGG
CACACAAAAAAAAAGATGTGAGAGGTGTTTTCTAAGTCATCTGTTGTACTAAGAGGGCTC
AGGGCTGTATTCACAGAGCTGCTGGCAGTGCAAATAGCTTTGAATTATCCTTGGTTCTCT
ATCCTGAATTGTCAAAGCTCTTTGTTGCCTTTGTGAATAGCAGTCCATTAAGAAGAGGTT
CGTCCCTGTGAGAGCAGACTGCTGTCCTGGGACAGGACCAAATGCAAGTGTCTTTATAGG
AGAATGGGTCTTGAAACTTGTGTTTTCTTTCTTGTAATCTAGGGATCATAGACGGTATTT
CTATGTAAACGAACAGTCGGGAGAGTCTCAGTGGGAGTTCCCAGATGGTGAGGAGGAAGA
GGAAGAAAGCCAAGCACAGGAGAGTAGAGACGAGACGTCGAAACAGACCTTAAAAGACAA
AACTGGCACTGACTCAAATTCTACAGAATCTTCTGAAAATTCCACAGGTGGGACGATTTA
CTCTGGGTTACTTGGAGAGAAGTTATTTTAGAGGAAGGAAAAAAAACTTGTATTGATATA
TAAAAGAATTTAAATCTTAATCACATAAATTTCTAACTGAAAAATAGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-159, - strand, RNAz p=0.619348
               

               
               231-426, + strand, RNAz p=0.996531

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.619348
               

               
               231-426, + strand, RNAz p=0.996531

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               267-353, + strand, RNAmicro p=0.980419

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               267-353, + strand, RNAmicro p=0.980419

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               232-426, CJ466095 macaque brain cDNA library QnpA Macaca fascicularis cDNA 
(dbj|CJ466095.1|), blast E-value=0, identity=93.33% 
               

               
               232-424, DA010942 ADRGL2 Homo sapiens cDNA clone ADRGL2002700 5', mRNA 
(dbj|DA010942.1|), blast E-value=0, identity=94.3% 
               

               
               232-424, hh84g10.y1 NCI_CGAP_GU1 Homo sapiens cDNA clone IMAGE (gb|AW663010.1|), 
blast E-value=0, identity=94.3% 
               

               
               232-426, CH3#073_D12MF Canine heart normalized cDNA Library in pBluescript 
(gb|CF411400.1|), blast E-value=0, identity=97.44% 
               

               
               232-426, ILLUMIGEN_MCQ_30193 Katze_MMPB Macaca mulatta cDNA clone IBIUW 
(gb|CN648300.1|), blast E-value=0, identity=94.36% 
               

               
               232-426, ILLUMIGEN_MCQ_31210 Katze_MMPB Macaca mulatta cDNA clone IBIUW 
(gb|CN648729.1|), blast E-value=0, identity=94.36%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               232-426, CJ466095 macaque brain cDNA library QnpA Macaca fascicularis cDNA 
(dbj|CJ466095.1|), blast E-value=0, identity=93.33% 
               

               
               232-424, DA010942 ADRGL2 Homo sapiens cDNA clone ADRGL2002700 5', mRNA 
(dbj|DA010942.1|), blast E-value=0, identity=94.3% 
               

               
               232-424, hh84g10.y1 NCI_CGAP_GU1 Homo sapiens cDNA clone IMAGE (gb|AW663010.1|), 
blast E-value=0, identity=94.3% 
               

               
               232-426, CH3#073_D12MF Canine heart normalized cDNA Library in pBluescript 
(gb|CF411400.1|), blast E-value=0, identity=97.44% 
               

               
               232-426, ILLUMIGEN_MCQ_30193 Katze_MMPB Macaca mulatta cDNA clone IBIUW 
(gb|CN648300.1|), blast E-value=0, identity=94.36% 
               

               
               232-426, ILLUMIGEN_MCQ_31210 Katze_MMPB Macaca mulatta cDNA clone IBIUW 
(gb|CN648729.1|), blast E-value=0, identity=94.36%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-765, gnl|bosTau2|chr15 (49547781-49547021)
               

               
               1-765, gnl|Hg17|chr11 (47710148-47709384)
               

               
               1-765, gnl|Mm7|chr2 (90618771-90619445)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-765, gnl|bosTau2|chr15 (49547781-49547021)
               

               
               1-765, gnl|Hg17|chr11 (47710148-47709384)
               

               
               1-765, gnl|Mm7|chr2 (90618771-90619445)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-159, - strand, RNAz p=0.619348
	231-426, + strand, RNAz p=0.996531

	232-426, CJ466095 macaque brain cDNA library QnpA Macaca fascicularis cDNA (dbj\|CJ466095.1\|), blast E-value=0, identity=93.33%
	232-424, DA010942 ADRGL2 Homo sapiens cDNA clone ADRGL2002700 5', mRNA (dbj\|DA010942.1\|), blast E-value=0, identity=94.3%
	232-424, hh84g10.y1 NCI_CGAP_GU1 Homo sapiens cDNA clone IMAGE (gb\|AW663010.1\|), blast E-value=0, identity=94.3%
	232-426, CH3#073_D12MF Canine heart normalized cDNA Library in pBluescript (gb\|CF411400.1\|), blast E-value=0, identity=97.44%
	232-426, ILLUMIGEN_MCQ_30193 Katze_MMPB Macaca mulatta cDNA clone IBIUW (gb\|CN648300.1\|), blast E-value=0, identity=94.36%
	232-426, ILLUMIGEN_MCQ_31210 Katze_MMPB Macaca mulatta cDNA clone IBIUW (gb\|CN648729.1\|), blast E-value=0, identity=94.36%

	1-765, gnl\|bosTau2\|chr15 (49547781-49547021)
	1-765, gnl\|Hg17\|chr11 (47710148-47709384)
	1-765, gnl\|Mm7\|chr2 (90618771-90619445)