Non-Coding RNA Search

Ss1.1-Pig4-TMW8050G09.3

Sequence:


               
               TAAAGATAAACCAGATAATTATTTATTCCCTAGATCAGTAATTGTTAAACGTACAGATCC
ATCCCTGAGATGTGATTTGAATATGTCACCACTCCTGAAAGAGGGCATGGAAGCTCCAGA
GAATACAATATCTTGTAAGCAAAATTCGCCCCCCACCTCCCTTAGCTTAAATTTTTTTCC
GCTTTTCATTCAGATGCTCACTTGCTGGGCAAGAGGGTGAGTGGCATGAAAAAATGAAAT
GCAGCTTTTCCCAAATGGTTTTTATTAAATACTGTGGATGATAGAGGGATCTGTTACCTA
AGATGTGATGTGCTGGGCTGCAGGCAGTTCAGCATCTAGCAACCAGGAGCCTGTTTTACA
CGCACAAAGCTGCCTTCAGAAAGGCTCTTGTCTCTGCTCTGTAGCAAGTCATTTTCATCT
GGCTGCTCCTAGCATGTTGTACTGTAATGATTTTGTTTCTTGTGATGCAGGTTTCTTTCT
GCATCTAAATACACTATCTTTTGATGATCCTATAATGTTTTTATTTAGTTATTTATTCAT
CTATGTAAGGTATTTTTAAGTCCCCATATTAGAGTCTGCATGTATTTAATCAGAATGTAA
GGTTATTTGTGTGGTCAGTTTTCGTTTTGTTTTGTTTTTTTTTTTGATAGAAATTTAGGT
AGTTTGAGTATTTAAGTTGAATGTCCATAGTATTACCTTAAATTAAAATTTCAGTATGTA
GGTGTCTGTCTTATATAAAAGAATAATAATTATGTTAAGGCATAGTAGACTTCTTTTGAA
CACTTTTTTTTTTCGTTGATTTTTATTATAAGTATAAACCAAGAGATGCATTTCTCTGGA
GAAGAGTTTATCTCCTGGATAAATAAAATCATGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAGATAAACCAGATAATTATTTATTCCCTAGATCAGTAATTGTTAAACGTACAGATCC
ATCCCTGAGATGTGATTTGAATATGTCACCACTCCTGAAAGAGGGCATGGAAGCTCCAGA
GAATACAATATCTTGTAAGCAAAATTCGCCCCCCACCTCCCTTAGCTTAAATTTTTTTCC
GCTTTTCATTCAGATGCTCACTTGCTGGGCAAGAGGGTGAGTGGCATGAAAAAATGAAAT
GCAGCTTTTCCCAAATGGTTTTTATTAAATACTGTGGATGATAGAGGGATCTGTTACCTA
AGATGTGATGTGCTGGGCTGCAGGCAGTTCAGCATCTAGCAACCAGGAGCCTGTTTTACA
CGCACAAAGCTGCCTTCAGAAAGGCTCTTGTCTCTGCTCTGTAGCAAGTCATTTTCATCT
GGCTGCTCCTAGCATGTTGTACTGTAATGATTTTGTTTCTTGTGATGCAGGTTTCTTTCT
GCATCTAAATACACTATCTTTTGATGATCCTATAATGTTTTTATTTAGTTATTTATTCAT
CTATGTAAGGTATTTTTAAGTCCCCATATTAGAGTCTGCATGTATTTAATCAGAATGTAA
GGTTATTTGTGTGGTCAGTTTTCGTTTTGTTTTGTTTTTTTTTTTGATAGAAATTTAGGT
AGTTTGAGTATTTAAGTTGAATGTCCATAGTATTACCTTAAATTAAAATTTCAGTATGTA
GGTGTCTGTCTTATATAAAAGAATAATAATTATGTTAAGGCATAGTAGACTTCTTTTGAA
CACTTTTTTTTTTCGTTGATTTTTATTATAAGTATAAACCAAGAGATGCATTTCTCTGGA
GAAGAGTTTATCTCCTGGATAAATAAAATCATGCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               282-401, + strand, RNAz p=0.58366

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               282-401, + strand, RNAz p=0.58366

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB044805, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB044805, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               169-588, gnl|bosTau2|chr16 (3779035-3778624)
               

               
               169-588, gnl|Hg17|chr1 (203642001-203642411)
               

               
               169-588, gnl|Mm7|chr1 (130593949-130593573)
               


               
               638-876, gnl|bosTau2|chr16 (3778608-3778373)
               

               
               638-876, gnl|Hg17|chr1 (203642468-203642700)
               

               
               638-876, gnl|Mm7|chr1 (130593547-130593326)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-588, gnl|bosTau2|chr16 (3779035-3778624)
               

               
               169-588, gnl|Hg17|chr1 (203642001-203642411)
               

               
               169-588, gnl|Mm7|chr1 (130593949-130593573)
               


               
               638-876, gnl|bosTau2|chr16 (3778608-3778373)
               

               
               638-876, gnl|Hg17|chr1 (203642468-203642700)
               

               
               638-876, gnl|Mm7|chr1 (130593547-130593326)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ret (0.257467)
               

               
               mgm (0.180343)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               mgm (0.180343)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	169-588, gnl\|bosTau2\|chr16 (3779035-3778624)
	169-588, gnl\|Hg17\|chr1 (203642001-203642411)
	169-588, gnl\|Mm7\|chr1 (130593949-130593573)

	638-876, gnl\|bosTau2\|chr16 (3778608-3778373)
	638-876, gnl\|Hg17\|chr1 (203642468-203642700)
	638-876, gnl\|Mm7\|chr1 (130593547-130593326)