Ss1.1-Pig4-TMW8050G17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTGGCGCGCTTGCTTGCTTGGGCGAGCTTGATCTGGCCCTGCGCCGTGCTCTCCGAGC TGCTGTCCTGCTTTCCGGTCGGGTTGGTGGGGCATGGAGCGGGTGAGCGGCGGCTGTGAT CGCCGCGGCTCCTCCTCTGCAGACCCACGAAGCACCTTCGTGTTGAGTAACCTAGCGGAG GTGGTGGAGCGTGTCCTCACTTTCCTGCCCGCCAAGGCGTTGCTGCGGGTGGCCGGTGTG TGTCGCTTATGGAGGGAGTGTGTGCGCAGAGTGTTGCGGACCCATCAGAGTGTGACCTGG ATCTCCACGGGCTCAGGGGATGCTGGCCTCCTGGAGGAGCATTGCTTGGTCCGCGTGGTA ACCGAAGAGCTTGAGAATGTCCATATCTTACCACGGACAGTTCTTTACATGGCTGATTCA GAAACTTTTATCAGTCTGGAGGAGTGTCGCGGCCATAAAAGAGCCAGGAAAAGAACTACT ATGGAAGCAGCATTTGCCCTTGAGAAGCTCTTCCCAAAACAATGCCAAATCCTTGGGATT GTGACCCCAGGAATTGTAGTGACACCAATGGGATCAAGTAGCAGTCGACCTCAGGAAATA GAAATTGGAGAATCTGGTTTTGCTCTCTTATTCCCTCAAATTGAAGGAATAAAAATACAA CCCTTTCATTTTATTAAGGATCCAAAGAAACTAACACTAGAAAGGCAACAGCTCACTGAA GTAGGTCTTTTAGATAACCCTGAGCTTCGTGTGGTCCTTGTGTTTGGCTATAACTGCTGT AAGGCAGGAGCCAGTAATTATCTGCAGCGAGTAGTCAGCACTTTCAGTGATATGAATGTC ATCTTGGCTGGAGGCCAGGTGGACAACCTGGCATCGCTGACCTCTGAAAAGAACCCTCTG GATATTGATGCCACTGGTGTGGTGGGACTGTCATTTAGTGGACACCGAATCCAGAGTGCC ACAGTGCTTCTCAACGAGGATGTCAATGACGAGAAGACTGCTGAGGCTGCGATGCAGCGG CTCAAAGCAGCCAACATTCCAGAGCAGAACACCATTGGCTTCATGTTTGCGTGTGTTGGT AGGGGCTTTCAATACTACAGAGCCAAGGGGAATGTGGAGGCTGATGCATTTAGAAAGTTT TTTCCTAGGGTTCCTTTATTTGGCTTCTTTGGAAATGGAGAAATTGGATGTGATCGCATA GTCACTGGAAACTTTATACTGAAGAAGTGTAACAAGGTAAAGGACGATGACCTCTTTCAC AGCTACACAACAATAATGGCTCTCATTCATCTTGGGTCATCTAAATAAAGCTACTTCTAC AGTGGCTTTCACAATATATAACTTCCGGCTTCTGCTTTTTCTAGACAACGGAAACTTGGT GTATGTGTACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTGGCGCGCTTGCTTGCTTGGGCGAGCTTGATCTGGCCCTGCGCCGTGCTCTCCGAGC TGCTGTCCTGCTTTCCGGTCGGGTTGGTGGGGCATGGAGCGGGTGAGCGGCGGCTGTGAT CGCCGCGGCTCCTCCTCTGCAGACCCACGAAGCACCTTCGTGTTGAGTAACCTAGCGGAG GTGGTGGAGCGTGTCCTCACTTTCCTGCCCGCCAAGGCGTTGCTGCGGGTGGCCGGTGTG TGTCGCTTATGGAGGGAGTGTGTGCGCAGAGTGTTGCGGACCCATCAGAGTGTGACCTGG ATCTCCACGGGCTCAGGGGATGCTGGCCTCCTGGAGGAGCATTGCTTGGTCCGCGTGGTA ACCGAAGAGCTTGAGAATGTCCATATCTTACCACGGACAGTTCTTTACATGGCTGATTCA GAAACTTTTATCAGTCTGGAGGAGTGTCGCGGCCATAAAAGAGCCAGGAAAAGAACTACT ATGGAAGCAGCATTTGCCCTTGAGAAGCTCTTCCCAAAACAATGCCAAATCCTTGGGATT GTGACCCCAGGAATTGTAGTGACACCAATGGGATCAAGTAGCAGTCGACCTCAGGAAATA GAAATTGGAGAATCTGGTTTTGCTCTCTTATTCCCTCAAATTGAAGGAATAAAAATACAA CCCTTTCATTTTATTAAGGATCCAAAGAAACTAACACTAGAAAGGCAACAGCTCACTGAA GTAGGTCTTTTAGATAACCCTGAGCTTCGTGTGGTCCTTGTGTTTGGCTATAACTGCTGT AAGGCAGGAGCCAGTAATTATCTGCAGCGAGTAGTCAGCACTTTCAGTGATATGAATGTC ATCTTGGCTGGAGGCCAGGTGGACAACCTGGCATCGCTGACCTCTGAAAAGAACCCTCTG GATATTGATGCCACTGGTGTGGTGGGACTGTCATTTAGTGGACACCGAATCCAGAGTGCC ACAGTGCTTCTCAACGAGGATGTCAATGACGAGAAGACTGCTGAGGCTGCGATGCAGCGG CTCAAAGCAGCCAACATTCCAGAGCAGAACACCATTGGCTTCATGTTTGCGTGTGTTGGT AGGGGCTTTCAATACTACAGAGCCAAGGGGAATGTGGAGGCTGATGCATTTAGAAAGTTT TTTCCTAGGGTTCCTTTATTTGGCTTCTTTGGAAATGGAGAAATTGGATGTGATCGCATA GTCACTGGAAACTTTATACTGAAGAAGTGTAACAAGGTAAAGGACGATGACCTCTTTCAC AGCTACACAACAATAATGGCTCTCATTCATCTTGGGTCATCTAAATAAAGCTACTTCTAC AGTGGCTTTCACAATATATAACTTCCGGCTTCTGCTTTTTCTAGACAACGGAAACTTGGT GTATGTGTACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 596-726, - strand, RNAz p=0.713756 | |
| 891-1049, - strand, RNAz p=0.954466 | |
| 891-1000, - strand, RNAz p=0.707035 | |
| 1241-1360, + strand, RNAz p=0.941918 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 596-726, - strand, RNAz p=0.713756 | |
| 891-1049, - strand, RNAz p=0.954466 | |
| 891-1000, - strand, RNAz p=0.707035 | |
| 1241-1360, + strand, RNAz p=0.941918 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 224-375, gnl|bosTau2|chr21 (20737450-20737601) | |
| 224-375, gnl|Hg17|chr15 (73983874-73984025) | |
| 224-375, gnl|Mm7|chr9 (55239652-55239803) | |
| 557-726, gnl|bosTau2|chr21 (20751724-20751893) | |
| 557-726, gnl|canFam2|chr30 (43114157-43113969) | |
| 557-726, gnl|dasNov1|scaffold_36425 (12033-11845) | |
| 557-726, gnl|galGal2|chr10 (4291246-4291060) | |
| 557-726, gnl|hg17|chr15 (73996624-73996812) | |
| 557-726, gnl|Hg17|chr15 (73996623-73996792) | |
| 557-726, gnl|loxAfr1|scaffold_89642 (3859-4047) | |
| 557-726, gnl|mm7|chr9 (55248625-55248807) | |
| 557-726, gnl|Mm7|chr9 (55248624-55248793) | |
| 557-726, gnl|monDom2|scaffold_41 (17365098-17365288) | |
| 557-726, gnl|panTro1|chr16 (74623106-74623293) | |
| 557-726, gnl|rheMac2|chr7 (54894525-54894713) | |
| 557-726, gnl|rn3|chr8 (58780350-58780538) | |
| 891-1379, gnl|bosTau2|chr21 (20761864-20762352) | |
| 891-1379, gnl|canFam2|chr30 (43099500-43099076) | |
| 891-1379, gnl|dasNov1|scaffold_178982 (3163-3586) | |
| 891-1379, gnl|echTel1|scaffold_212586 (470-894) | |
| 891-1379, gnl|fr1|chrUn (159430026-159430420) | |
| 891-1379, gnl|galGal2|chr10 (4288869-4288456) | |
| 891-1379, gnl|hg17|chr15 (74012075-74012499) | |
| 891-1379, gnl|Hg17|chr15 (74012081-74012564) | |
| 891-1379, gnl|loxAfr1|scaffold_15419 (7276-7700) | |
| 891-1379, gnl|mm7|chr9 (55253546-55253970) | |
| 891-1379, gnl|Mm7|chr9 (55253552-55254043) | |
| 891-1379, gnl|monDom2|scaffold_41 (17373239-17373660) | |
| 891-1379, gnl|oryCun1|scaffold_140481 (3544-3964) | |
| 891-1379, gnl|panTro1|chr16_random (24853081-24852657) | |
| 891-1379, gnl|rheMac2|chr7 (54911926-54912350) | |
| 891-1379, gnl|rn3|chr8 (58785688-58786112) | |
| 891-1379, gnl|xenTro1|scaffold_62 (2434951-2434534) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 224-375, gnl|bosTau2|chr21 (20737450-20737601) | |
| 224-375, gnl|Hg17|chr15 (73983874-73984025) | |
| 224-375, gnl|Mm7|chr9 (55239652-55239803) | |
| 557-726, gnl|bosTau2|chr21 (20751724-20751893) | |
| 557-726, gnl|canFam2|chr30 (43114157-43113969) | |
| 557-726, gnl|dasNov1|scaffold_36425 (12033-11845) | |
| 557-726, gnl|galGal2|chr10 (4291246-4291060) | |
| 557-726, gnl|hg17|chr15 (73996624-73996812) | |
| 557-726, gnl|Hg17|chr15 (73996623-73996792) | |
| 557-726, gnl|loxAfr1|scaffold_89642 (3859-4047) | |
| 557-726, gnl|mm7|chr9 (55248625-55248807) | |
| 557-726, gnl|Mm7|chr9 (55248624-55248793) | |
| 557-726, gnl|monDom2|scaffold_41 (17365098-17365288) | |
| 557-726, gnl|panTro1|chr16 (74623106-74623293) | |
| 557-726, gnl|rheMac2|chr7 (54894525-54894713) | |
| 557-726, gnl|rn3|chr8 (58780350-58780538) | |
| 891-1379, gnl|bosTau2|chr21 (20761864-20762352) | |
| 891-1379, gnl|canFam2|chr30 (43099500-43099076) | |
| 891-1379, gnl|dasNov1|scaffold_178982 (3163-3586) | |
| 891-1379, gnl|echTel1|scaffold_212586 (470-894) | |
| 891-1379, gnl|fr1|chrUn (159430026-159430420) | |
| 891-1379, gnl|galGal2|chr10 (4288869-4288456) | |
| 891-1379, gnl|hg17|chr15 (74012075-74012499) | |
| 891-1379, gnl|Hg17|chr15 (74012081-74012564) | |
| 891-1379, gnl|loxAfr1|scaffold_15419 (7276-7700) | |
| 891-1379, gnl|mm7|chr9 (55253546-55253970) | |
| 891-1379, gnl|Mm7|chr9 (55253552-55254043) | |
| 891-1379, gnl|monDom2|scaffold_41 (17373239-17373660) | |
| 891-1379, gnl|oryCun1|scaffold_140481 (3544-3964) | |
| 891-1379, gnl|panTro1|chr16_random (24853081-24852657) | |
| 891-1379, gnl|rheMac2|chr7 (54911926-54912350) | |
| 891-1379, gnl|rn3|chr8 (58785688-58786112) | |
| 891-1379, gnl|xenTro1|scaffold_62 (2434951-2434534) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| pgl (0.236967) | |
| sin (0.174948) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| eep (0.122564) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.236967) | |
| sin (0.174948) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| eep (0.122564) | |
| eje (0.0988338) |