Ss1.1-Pig4-TMW8050H01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCCGTCCACTTAAGAGGTCGGCCGAGAGTTATTTGGCAACAGCCCCTGGGTTACTCTG GTTTAGGGTCGCCGCCGCGGTTGCGGAAGAAGAAAGGAGTCGCCGGCGTCGCGGCTTTTT GGAGAAAGTGTCAGGGTTGCCGAAAGCCTTGAAGTGCTGGCGAGGAAGATGACGTGCAAA TAAAGTATCATTTTTCCCCGGCACTTGTGGGCCAGGAGTAGTCCAGCCACTGGCATCATA AAAAATAGCTTTATTTCAGGACTGACAGTGAGGATTGATATTTGGGTTATTTCAACATGA GCTTCCTGTTACCCAAGCTGAGCAGCAAAAAGGAAGTAGACCAGGCGATAAAAAGTACTG CAGAGAAGGTGTTGGTTCTCAGGTTTGGGAGAGACGAGGATCCTGTCTGTCTGCAGCTAG ATGATATTCTTTCTAAAACCTCTTCTGACTTAAGCAAAATGGCTACTATATATCTGGTAG ATGTGGACCAGACTCCAGTCTATACACACTATTTTGACATCAGTTACATTCCTTCTACTG TGTTTTTCTTCAATGGGCAGCATATGAAAGTGGATTATGGGTCCCCAGATCACACCAAGT TTGTGGGAAGTTTCAAAACCAAACAAGACTTTATAGATTTGATTGAAGTAATTTATCGAG GAGCAATGAGGGGAAAACTTATTGTCCAAAGTCCCATTGATCCCAAGAATATTCCCAAAT ACGACCTGCTCTATCAAGACATTTAGCAGGTTCACTGCTGTCAAAGTCGAAGAGAAAGGC ACATCCTGAAAGAGTACCTGAACCCAGCTGTGCTGTTTTCCTGGAGTCCTGCGGAAGCGT GGTCAGCATCCTGGCGGAGAAGAGGCTTGATATGTGTAGAGCTTACTTGTCCCCAGGTAG AAGACGTGTGGCAATGGCACTGAGGTCACATGACCAGAGACGCCGGAGTGTCTACCCCTA CGGACCTCGGCGCAGCCCCATCAGCCACGGTCAGTGGCCCCAGCGGGATCATTTCACCCT CTCTTTATATTGTGCTTTTCTTTCTTCTTTAAGGTAATACAGAATCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCCGTCCACTTAAGAGGTCGGCCGAGAGTTATTTGGCAACAGCCCCTGGGTTACTCTG GTTTAGGGTCGCCGCCGCGGTTGCGGAAGAAGAAAGGAGTCGCCGGCGTCGCGGCTTTTT GGAGAAAGTGTCAGGGTTGCCGAAAGCCTTGAAGTGCTGGCGAGGAAGATGACGTGCAAA TAAAGTATCATTTTTCCCCGGCACTTGTGGGCCAGGAGTAGTCCAGCCACTGGCATCATA AAAAATAGCTTTATTTCAGGACTGACAGTGAGGATTGATATTTGGGTTATTTCAACATGA GCTTCCTGTTACCCAAGCTGAGCAGCAAAAAGGAAGTAGACCAGGCGATAAAAAGTACTG CAGAGAAGGTGTTGGTTCTCAGGTTTGGGAGAGACGAGGATCCTGTCTGTCTGCAGCTAG ATGATATTCTTTCTAAAACCTCTTCTGACTTAAGCAAAATGGCTACTATATATCTGGTAG ATGTGGACCAGACTCCAGTCTATACACACTATTTTGACATCAGTTACATTCCTTCTACTG TGTTTTTCTTCAATGGGCAGCATATGAAAGTGGATTATGGGTCCCCAGATCACACCAAGT TTGTGGGAAGTTTCAAAACCAAACAAGACTTTATAGATTTGATTGAAGTAATTTATCGAG GAGCAATGAGGGGAAAACTTATTGTCCAAAGTCCCATTGATCCCAAGAATATTCCCAAAT ACGACCTGCTCTATCAAGACATTTAGCAGGTTCACTGCTGTCAAAGTCGAAGAGAAAGGC ACATCCTGAAAGAGTACCTGAACCCAGCTGTGCTGTTTTCCTGGAGTCCTGCGGAAGCGT GGTCAGCATCCTGGCGGAGAAGAGGCTTGATATGTGTAGAGCTTACTTGTCCCCAGGTAG AAGACGTGTGGCAATGGCACTGAGGTCACATGACCAGAGACGCCGGAGTGTCTACCCCTA CGGACCTCGGCGCAGCCCCATCAGCCACGGTCAGTGGCCCCAGCGGGATCATTTCACCCT CTCTTTATATTGTGCTTTTCTTTCTTCTTTAAGGTAATACAGAATCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 80-192, + strand, RNAz p=0.997549 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-192, + strand, RNAz p=0.997549 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_017853, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-247, gnl|bosTau2|chr18 (32099603-32099852) | |
| 1-247, gnl|Hg17|chr16 (70684944-70684703) | |
| 1-247, gnl|Mm7|chr8 (108166145-108166351) | |
| 254-427, gnl|bosTau2|chr18 (32102800-32102973) | |
| 254-427, gnl|canFam2|chr5 (80814182-80814368) | |
| 254-427, gnl|danRer3|chrUn (104993890-104993730) | |
| 254-427, gnl|dasNov1|scaffold_58619 (8372-8187) | |
| 254-427, gnl|echTel1|scaffold_28884 (1283-1095) | |
| 254-427, gnl|fr1|chrUn (216094079-216093910) | |
| 254-427, gnl|galGal2|chr1 (79395871-79396021) | |
| 254-427, gnl|hg17|chr16 (70682010-70682198) | |
| 254-427, gnl|Hg17|chr16 (70682196-70682019) | |
| 254-427, gnl|loxAfr1|scaffold_699 (88929-89117) | |
| 254-427, gnl|mm7|chr8 (108169237-108169058) | |
| 254-427, gnl|Mm7|chr8 (108169061-108169228) | |
| 254-427, gnl|monDom2|scaffold_23 (1241375-1241561) | |
| 254-427, gnl|oryCun1|scaffold_177992 (42569-42384) | |
| 254-427, gnl|panTro1|chr18 (65051112-65051300) | |
| 254-427, gnl|rheMac2|chr20 (70547193-70547009) | |
| 254-427, gnl|rn3|chr19 (39441310-39441131) | |
| 254-427, gnl|tetNig1|chr5 (8173396-8173540) | |
| 254-427, gnl|xenTro1|scaffold_227 (1647616-1647478) | |
| 580-1068, gnl|bosTau2|chr18 (32105379-32105859) | |
| 580-1068, gnl|Hg17|chr16 (70678203-70677733) | |
| 580-1068, gnl|Mm7|chr8 (108172825-108173275) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-247, gnl|bosTau2|chr18 (32099603-32099852) | |
| 1-247, gnl|Hg17|chr16 (70684944-70684703) | |
| 1-247, gnl|Mm7|chr8 (108166145-108166351) | |
| 254-427, gnl|bosTau2|chr18 (32102800-32102973) | |
| 254-427, gnl|canFam2|chr5 (80814182-80814368) | |
| 254-427, gnl|danRer3|chrUn (104993890-104993730) | |
| 254-427, gnl|dasNov1|scaffold_58619 (8372-8187) | |
| 254-427, gnl|echTel1|scaffold_28884 (1283-1095) | |
| 254-427, gnl|fr1|chrUn (216094079-216093910) | |
| 254-427, gnl|galGal2|chr1 (79395871-79396021) | |
| 254-427, gnl|hg17|chr16 (70682010-70682198) | |
| 254-427, gnl|Hg17|chr16 (70682196-70682019) | |
| 254-427, gnl|loxAfr1|scaffold_699 (88929-89117) | |
| 254-427, gnl|mm7|chr8 (108169237-108169058) | |
| 254-427, gnl|Mm7|chr8 (108169061-108169228) | |
| 254-427, gnl|monDom2|scaffold_23 (1241375-1241561) | |
| 254-427, gnl|oryCun1|scaffold_177992 (42569-42384) | |
| 254-427, gnl|panTro1|chr18 (65051112-65051300) | |
| 254-427, gnl|rheMac2|chr20 (70547193-70547009) | |
| 254-427, gnl|rn3|chr19 (39441310-39441131) | |
| 254-427, gnl|tetNig1|chr5 (8173396-8173540) | |
| 254-427, gnl|xenTro1|scaffold_227 (1647616-1647478) | |
| 580-1068, gnl|bosTau2|chr18 (32105379-32105859) | |
| 580-1068, gnl|Hg17|chr16 (70678203-70677733) | |
| 580-1068, gnl|Mm7|chr8 (108172825-108173275) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| lyg (0.266205) | |
| mas (0.210305) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lyg (0.266205) | |
| mas (0.210305) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) |