Non-Coding RNA Search

Ss1.1-Pig4-TMW8050H11.3

Sequence:


               
               AAGTACCAGTTCTAAATGTCAGTTATAAGCCACAGAAAATCAGTCCCAAATCAACTGGCA
GTGTTCGACAGCTACTACATGAAAAGATAAGAGATGCTTACACTCATCCACAATTTGTGA
CTGATGTAATGAAGCCTCTGCAAATTGAAAACATTATTGATCAAGAGGTACAGACATTAT
CTGGTGGTGAACTGCAGCGAGTAGCTTTAGCTCTCTGTTTGGGCAAACCTGCTGATGTCT
ATTTAATTGATGAACCATCTGCATATTTGGATTCTGAACAGAGATTAATGGCTGCTCGAG
TTGTCAAACGTTTTATACTCCATGCTAAGAAGACAGCCTTTGTTGTAGAACATGACTTCA
TCATGGCCACCTATCTAGCAGATCGAGTCATTGTTTTTGATGGTATTCCATCCAAGAATA
CAGTTGCAAACAGTCCTCAAACCCTTTTGGCTGGCATGAATAAATTTCTGTCTCAGCTTG
AAATTACATTCAGAAGAGATCCAAACAACTATAGGCCAAGAATAAACAAACTCAATTCAA
TTAAGGATGTAGAACAAAAGAAGAGTGGAAACTACTTTTTCTTGGATGATTAGAGTGAAT
CTAAGGATATCAATAAGCCATTTATTAAAAAAACATTTTGGGGGATTTTTGTCATATAAA
ACTTAAATCAGGTTTTATGCCTCACATGCTCTGGAGCTTGAAGTATAATTACTTATTGTA
ACATCAAAAACCAGTTGTGCAGTAAATTATACTCTGAATACAGAAAATGCCACTTTTCTG
TTCTTGATGATAAGGCCCTTTTTGTGCATAACGTTCTAAAATGAAGACATTTCAGGCTAT
ACAAATTACCTCCAAGTTTTCATGATGTATGAGAAGATTTTCAGTAGGTGTATTATATAT
TCATGTACCAAATGCTGACCAGTGTTGCCCCCTTTTAAAAATCTTGCAAGAGGTTTCTGT
ACTTACCTTGTTTGCCAAATACGCCAGTATAATGAAACTGCCCTTATTTTAAAAGCCAGT
CGGTGATTCCCCTGGTGAAATTTGATAAACATCAGGATTACATATATTTGTTTTATTCTT
TGCATTAAATTATTAGTGTGTTTAGGCTTTCAAAGGAATATGATCTACCAAAACACCACT
TTTGGAAAAAGACTATTTATTAACCATCTTAGGCATTGTTTACAGTGTTTTCGGTGCTTT
TGAATATCTTTATCAAAACATTTTATCCCACCCTCCTCTCTCCCCTCCTCCCAAAAAACT
TAACTTTACTCCATAAATTCCCTAAGGTAATATTCTGTAATTATCCTCAAGGTAATGTCT
TTCTATAAACATGCCTTTACATAATCACTTATCAAGATTTAGGAAAAAGCATTTTAAAGA
TGATTTGTTTCCCTTAAAATTACAGTACAGTACAAGCTCAAAATCTGCAGAGTTGGTCCC
TAAGCATCTCTGTCTTTGTAAACTTCCACAGATTGCTGATGAGCAACCAAGGACTGTGAG
CCACTTTTAAAGGCAACATTAATGTAGTGTTTCCAGATAGCAATACAAAGTAACCCTTGG
TACCAAATATGTTCATTTCTAAGTTTAGATATAGAGGATATTATCTAAATTTTTAGTTTT
AAATAGTGTTGTAGCAGGAGTTCTAAAAAGTCATCCAAATTTTTTGAGTTCCTAAGTTTG
AACAGTGGGAGACCTATGGTGTCAAACCACTTTCAGTTATACATCTGACTAATGCACTGA
ACTGGAACTTACAGTACAAAGAGGAAAAGAGTTTAGGAAAATTAGAATTGAACAGACTTT
TAGAGCTCCTTGAAACAGTAGAAGCTTTAATATGCAGACAGTGGATAGGAAATATGGTTT
AATGGACCCCATTAGGCCTTTTAAAAATTAATTTATATGAGTAATCCATAAATACATATT
GTACAGAAAAATTCAGATAATAGAAATATATGGAATAGTTATGATCTCCCATCATTTTAC
CCTCCCAAAGGTTACTGGTGTTTATGTTTAATAATATATATTCTTTCATGCTTTTTTTCT
GTGCACTTAAATAAGTGTGAATATGTAAAGGGTTTGTTTTGTACATAATTGGGATTATAC
TAAAGTAAGTAGTGCCTATTTTTAATGATAGGTTAAATTTGTGAATGATTATTTCAAATA
TATTGAATAAAATAAGACAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTACCAGTTCTAAATGTCAGTTATAAGCCACAGAAAATCAGTCCCAAATCAACTGGCA
GTGTTCGACAGCTACTACATGAAAAGATAAGAGATGCTTACACTCATCCACAATTTGTGA
CTGATGTAATGAAGCCTCTGCAAATTGAAAACATTATTGATCAAGAGGTACAGACATTAT
CTGGTGGTGAACTGCAGCGAGTAGCTTTAGCTCTCTGTTTGGGCAAACCTGCTGATGTCT
ATTTAATTGATGAACCATCTGCATATTTGGATTCTGAACAGAGATTAATGGCTGCTCGAG
TTGTCAAACGTTTTATACTCCATGCTAAGAAGACAGCCTTTGTTGTAGAACATGACTTCA
TCATGGCCACCTATCTAGCAGATCGAGTCATTGTTTTTGATGGTATTCCATCCAAGAATA
CAGTTGCAAACAGTCCTCAAACCCTTTTGGCTGGCATGAATAAATTTCTGTCTCAGCTTG
AAATTACATTCAGAAGAGATCCAAACAACTATAGGCCAAGAATAAACAAACTCAATTCAA
TTAAGGATGTAGAACAAAAGAAGAGTGGAAACTACTTTTTCTTGGATGATTAGAGTGAAT
CTAAGGATATCAATAAGCCATTTATTAAAAAAACATTTTGGGGGATTTTTGTCATATAAA
ACTTAAATCAGGTTTTATGCCTCACATGCTCTGGAGCTTGAAGTATAATTACTTATTGTA
ACATCAAAAACCAGTTGTGCAGTAAATTATACTCTGAATACAGAAAATGCCACTTTTCTG
TTCTTGATGATAAGGCCCTTTTTGTGCATAACGTTCTAAAATGAAGACATTTCAGGCTAT
ACAAATTACCTCCAAGTTTTCATGATGTATGAGAAGATTTTCAGTAGGTGTATTATATAT
TCATGTACCAAATGCTGACCAGTGTTGCCCCCTTTTAAAAATCTTGCAAGAGGTTTCTGT
ACTTACCTTGTTTGCCAAATACGCCAGTATAATGAAACTGCCCTTATTTTAAAAGCCAGT
CGGTGATTCCCCTGGTGAAATTTGATAAACATCAGGATTACATATATTTGTTTTATTCTT
TGCATTAAATTATTAGTGTGTTTAGGCTTTCAAAGGAATATGATCTACCAAAACACCACT
TTTGGAAAAAGACTATTTATTAACCATCTTAGGCATTGTTTACAGTGTTTTCGGTGCTTT
TGAATATCTTTATCAAAACATTTTATCCCACCCTCCTCTCTCCCCTCCTCCCAAAAAACT
TAACTTTACTCCATAAATTCCCTAAGGTAATATTCTGTAATTATCCTCAAGGTAATGTCT
TTCTATAAACATGCCTTTACATAATCACTTATCAAGATTTAGGAAAAAGCATTTTAAAGA
TGATTTGTTTCCCTTAAAATTACAGTACAGTACAAGCTCAAAATCTGCAGAGTTGGTCCC
TAAGCATCTCTGTCTTTGTAAACTTCCACAGATTGCTGATGAGCAACCAAGGACTGTGAG
CCACTTTTAAAGGCAACATTAATGTAGTGTTTCCAGATAGCAATACAAAGTAACCCTTGG
TACCAAATATGTTCATTTCTAAGTTTAGATATAGAGGATATTATCTAAATTTTTAGTTTT
AAATAGTGTTGTAGCAGGAGTTCTAAAAAGTCATCCAAATTTTTTGAGTTCCTAAGTTTG
AACAGTGGGAGACCTATGGTGTCAAACCACTTTCAGTTATACATCTGACTAATGCACTGA
ACTGGAACTTACAGTACAAAGAGGAAAAGAGTTTAGGAAAATTAGAATTGAACAGACTTT
TAGAGCTCCTTGAAACAGTAGAAGCTTTAATATGCAGACAGTGGATAGGAAATATGGTTT
AATGGACCCCATTAGGCCTTTTAAAAATTAATTTATATGAGTAATCCATAAATACATATT
GTACAGAAAAATTCAGATAATAGAAATATATGGAATAGTTATGATCTCCCATCATTTTAC
CCTCCCAAAGGTTACTGGTGTTTATGTTTAATAATATATATTCTTTCATGCTTTTTTTCT
GTGCACTTAAATAAGTGTGAATATGTAAAGGGTTTGTTTTGTACATAATTGGGATTATAC
TAAAGTAAGTAGTGCCTATTTTTAATGATAGGTTAAATTTGTGAATGATTATTTCAAATA
TATTGAATAAAATAAGACAAAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|16877481|gb|AAH16988.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16877481|gb|AAH16988.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1542-2182, gnl|bosTau2|chr1 (70386385-70387040)
               

               
               1542-2182, gnl|Hg17|chr4 (146407279-146407913)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1542-2182, gnl|bosTau2|chr1 (70386385-70387040)
               

               
               1542-2182, gnl|Hg17|chr4 (146407279-146407913)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               sin (0.349895)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	1542-2182, gnl\|bosTau2\|chr1 (70386385-70387040)
	1542-2182, gnl\|Hg17\|chr4 (146407279-146407913)

	sin (0.349895)
	spl (0.286369)
	fce (0.271592)
	cbl (0.229595)
	tes (0.207814)
	fli (0.202881)
	fcc (0.197785)
	ill (0.175593)
	liv (0.146284)
	ste (0.135208)
	pla (0.133672)
	ute (0.132784)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)