Non-Coding RNA Search

Ss1.1-Pig4-TMW8050H17.5

Sequence:


               
               GCGTCCTGCGTCGTTACTTTTGAAACCGGTGGCGGGGAACTACTCTGGAAGTCACTGGTG
AGGCTGGTTGCCGCGTGAAAGCGCATCTCTTCATCCGTGGGCCTGGCCATGGCGCTGCAG
CTCTCCCGGGAGCAAGGCATTACCCTACGCGGGAGCGCCGAAATCGTGGCGGAGTTCTTC
TCATTTGGCATCAACAGCATTTTATATCAGCGTGGCATATATCCATCTGAAACCTTTACT
CGAGTACAGAAATACGGACTTACCTTGCTTGTAACTACTGACCCTGAGCTCATAAAATAC
CTAAATAATGTGGTGGAACAACTAAAAGAGTGGTTATACAAGTGTTCAGTTCAGAAACTG
GTGGTAGTCATCTCAAATATTGAAAGTGGTGAGGTCCTTGAAAGATGGCAATTTGATATT
GAGTGTGACAAGACTGCAAAAGATGACAGTGCACCCAGAGAAAAATCTCAGAAAGCCATC
CAAGATGAAATCCGGTCAGTGATTAGACAGATCACAGCTACAGTGACATTTCTGCCACTG
CTGGAAGTCTCTTGTTCGTTTGATCTCCTGATTTATACAGACAAAGATTTGGTTGTACCT
GAAAAATGGGAAGAATCGGGACCACAGTTCATAACCAATTCTGAGGAAGTTCGTCTTCGT
TCATTTACTACTACAATTCACAAAGTAAATAGCATGGTAGCCTACAAAATTCCTGTCAAT
GACTGAGGATGAGAAGAGGACAGTAATGTACCTGTGATTCTCAAATGTGGTTTTCCTGAA
ACCAAATCAACTACAGTTGATGTTTTATTTCATTGGTTAATATTTAGATGGGGAAAACTT
AACATTATACTTTAATGAATCTGTGCATAGTTGTCCCATTTTTTGGTGCCTGTTTGCCTT
TCCATAGGGCTGGTGTAAATTATTGCACATTGTTCCAAAGAGAACTAGCAGATTACATCA
ACATTGTAATGTCAGTTCCTTTGAAGGTGGTAACTGTAGGTGGAAAAATTTTTGCTATGA
AGCTTAATATCTTTCTAAGTCAGTCCTTTTTGTCAAGTAGCTTGGCTCAGAATATGGAGA
AATATTTAAATATAAAATAGAGCAAAAGAAATCTTTGTTTAGATCCTGAAGTGACTAATG
ATAGTCTGTAAGTACTGAAATACTGCTCCTATTAGGTTCTTTTGCCATTTATTTCATTTG
TATAGTTTCCATATTGAAAATTTTTGCAATTGATTTTAATTTATGTAACATGAACCTGTG
AAGCTGTTGATGTTTCTACTGTTTAAATTGCTATGATACAGAACTCTTAAAAATGCCTTT
TTATGTTTCATAAAAATCAAGCTTTAAATGACAGTGATAAAATAAAGTTAAATGTATGTT
TTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTCCTGCGTCGTTACTTTTGAAACCGGTGGCGGGGAACTACTCTGGAAGTCACTGGTG
AGGCTGGTTGCCGCGTGAAAGCGCATCTCTTCATCCGTGGGCCTGGCCATGGCGCTGCAG
CTCTCCCGGGAGCAAGGCATTACCCTACGCGGGAGCGCCGAAATCGTGGCGGAGTTCTTC
TCATTTGGCATCAACAGCATTTTATATCAGCGTGGCATATATCCATCTGAAACCTTTACT
CGAGTACAGAAATACGGACTTACCTTGCTTGTAACTACTGACCCTGAGCTCATAAAATAC
CTAAATAATGTGGTGGAACAACTAAAAGAGTGGTTATACAAGTGTTCAGTTCAGAAACTG
GTGGTAGTCATCTCAAATATTGAAAGTGGTGAGGTCCTTGAAAGATGGCAATTTGATATT
GAGTGTGACAAGACTGCAAAAGATGACAGTGCACCCAGAGAAAAATCTCAGAAAGCCATC
CAAGATGAAATCCGGTCAGTGATTAGACAGATCACAGCTACAGTGACATTTCTGCCACTG
CTGGAAGTCTCTTGTTCGTTTGATCTCCTGATTTATACAGACAAAGATTTGGTTGTACCT
GAAAAATGGGAAGAATCGGGACCACAGTTCATAACCAATTCTGAGGAAGTTCGTCTTCGT
TCATTTACTACTACAATTCACAAAGTAAATAGCATGGTAGCCTACAAAATTCCTGTCAAT
GACTGAGGATGAGAAGAGGACAGTAATGTACCTGTGATTCTCAAATGTGGTTTTCCTGAA
ACCAAATCAACTACAGTTGATGTTTTATTTCATTGGTTAATATTTAGATGGGGAAAACTT
AACATTATACTTTAATGAATCTGTGCATAGTTGTCCCATTTTTTGGTGCCTGTTTGCCTT
TCCATAGGGCTGGTGTAAATTATTGCACATTGTTCCAAAGAGAACTAGCAGATTACATCA
ACATTGTAATGTCAGTTCCTTTGAAGGTGGTAACTGTAGGTGGAAAAATTTTTGCTATGA
AGCTTAATATCTTTCTAAGTCAGTCCTTTTTGTCAAGTAGCTTGGCTCAGAATATGGAGA
AATATTTAAATATAAAATAGAGCAAAAGAAATCTTTGTTTAGATCCTGAAGTGACTAATG
ATAGTCTGTAAGTACTGAAATACTGCTCCTATTAGGTTCTTTTGCCATTTATTTCATTTG
TATAGTTTCCATATTGAAAATTTTTGCAATTGATTTTAATTTATGTAACATGAACCTGTG
AAGCTGTTGATGTTTCTACTGTTTAAATTGCTATGATACAGAACTCTTAAAAATGCCTTT
TTATGTTTCATAAAAATCAAGCTTTAAATGACAGTGATAAAATAAAGTTAAATGTATGTT
TTAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12653177|gb|AAH00356.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12653177|gb|AAH00356.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-106, gnl|bosTau2|chr14 (11922182-11922077)
               

               
               1-106, gnl|Hg17|chr4 (121345600-121345495)
               


               
               1179-1389, gnl|bosTau2|chr23 (24836313-24836510)
               

               
               1179-1389, gnl|Hg17|chr4 (121338400-121338202)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-106, gnl|bosTau2|chr14 (11922182-11922077)
               

               
               1-106, gnl|Hg17|chr4 (121345600-121345495)
               


               
               1179-1389, gnl|bosTau2|chr23 (24836313-24836510)
               

               
               1179-1389, gnl|Hg17|chr4 (121338400-121338202)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               fty (0.351679)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-106, gnl\|bosTau2\|chr14 (11922182-11922077)
	1-106, gnl\|Hg17\|chr4 (121345600-121345495)

	1179-1389, gnl\|bosTau2\|chr23 (24836313-24836510)
	1179-1389, gnl\|Hg17\|chr4 (121338400-121338202)

	fty (0.351679)
	kid (0.259471)
	sug (0.254582)
	med (0.232504)
	tes (0.207814)
	col (0.195008)
	sin (0.174948)
	csp (0.161186)
	lin (0.145603)
	lnt (0.142308)
	nca (0.136874)
	ova (0.129132)
	thg (0.126791)
	tra (0.123092)
	eru (0.120048)
	nbm (0.0993246)
	eje (0.0988338)