Non-Coding RNA Search

Ss1.1-Pig4-TMW8050H18.5

Sequence:


               
               GCCCCTCCTCGGGGGTCATGATGGGCAGTAAGATGGCGTCTGCCAGCAGGGTCGTTCAGG
TAGTCAAGCCACATACTCCATTAATAAGGTTCCCAGACAGAAGAGACAATCCTAAACCCA
ATGTATCAGAAGTTTTGAGATCAGCAGCACTACCATCTCACCCTTCAATTTCACAGCATT
CTAAGGGAAGTAAATCGCCAGACTGGCTGAAGCATCAGGGTCCACCAGACACTGCAGAGA
TAATAAAAACATTACCTCAGAAATACAGAAGGAAACTTGTGTCTCAGGAAGAAATGGAAT
TTATCCAACGTGGAGGTCCAGAATAATTACTACCAATGTGGCTGCTGTTTGTCATCAAAC
AAAAGAATAGTCTTTACATTAGAGGACTTCAGAATGACAGATGAAAAATTGTACATTAAG
CAACTTTAATAAATACTCTGTAAAAAAAGAAAATGAAGTATAGAAAATTTAGATGGACAC
TTATATCTCCTAATTTATGTATCTGGGTCAGCTTCTCCACAAGCTTACCTAATTGTTTAT
ATACTTTATACTTATTAAAGTATACATTTTTAAATGTTAGCCTATTAATTTACTCTTGAT
TATCAAGCATTACAGTGTTGAACTATTAAAAGCACACAATGTCTACTGAAGTATCATAGG
TTTCCTATAATTTTACTTTTCTTTCAATTTCTGTTTAAACATGGAAAGAATATCAGGCAG
AATTGTAGCTTTCTGGGAAGTAATCTTCCTGAAATTGAAGGAGGATCAGTGAAATAATGA
CTCCATTATTTGTTCTTAACTCTCTTAATATTTTTGCATTCACAGAGTTAAACTGAAATA
TAACCAGCTTAATAAGCATATGGTACTCTAAATGATAAAAATATAGCCAAAGTAAAACAG
GTGGCTTTGTGGTATTAAGACTAAGGAGTTAACACAAAAGATTATTTGTAACCTATATTC
AGAAAAAAAATGTCAGTAGTTAAAATGGAAAATAAGAGATCAAAATGAATATAACATAGG
AATAATGTTTGACCAGAAACTGCTTTTGTTTCTAGGGATGTTAAGAAAGTCTTGTTCTTT
GGTTTATTTTACTGTTTTGATTGTGATCATGTATATGAATCCTGATAATCATAAAACTTT
CTCAAACTTATTGAAAACCTCATAAAATTAACCTATTTACCTTTTTATGCAATTTATGCA
ATTTTAATAGGGTCTTCCTTTGCCAAGGGTATGTATTATTGTGAAAGTAAAGCCTCACAA
AGTGAAATAAATTCTACTGCATACCTTTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCTCCTCGGGGGTCATGATGGGCAGTAAGATGGCGTCTGCCAGCAGGGTCGTTCAGG
TAGTCAAGCCACATACTCCATTAATAAGGTTCCCAGACAGAAGAGACAATCCTAAACCCA
ATGTATCAGAAGTTTTGAGATCAGCAGCACTACCATCTCACCCTTCAATTTCACAGCATT
CTAAGGGAAGTAAATCGCCAGACTGGCTGAAGCATCAGGGTCCACCAGACACTGCAGAGA
TAATAAAAACATTACCTCAGAAATACAGAAGGAAACTTGTGTCTCAGGAAGAAATGGAAT
TTATCCAACGTGGAGGTCCAGAATAATTACTACCAATGTGGCTGCTGTTTGTCATCAAAC
AAAAGAATAGTCTTTACATTAGAGGACTTCAGAATGACAGATGAAAAATTGTACATTAAG
CAACTTTAATAAATACTCTGTAAAAAAAGAAAATGAAGTATAGAAAATTTAGATGGACAC
TTATATCTCCTAATTTATGTATCTGGGTCAGCTTCTCCACAAGCTTACCTAATTGTTTAT
ATACTTTATACTTATTAAAGTATACATTTTTAAATGTTAGCCTATTAATTTACTCTTGAT
TATCAAGCATTACAGTGTTGAACTATTAAAAGCACACAATGTCTACTGAAGTATCATAGG
TTTCCTATAATTTTACTTTTCTTTCAATTTCTGTTTAAACATGGAAAGAATATCAGGCAG
AATTGTAGCTTTCTGGGAAGTAATCTTCCTGAAATTGAAGGAGGATCAGTGAAATAATGA
CTCCATTATTTGTTCTTAACTCTCTTAATATTTTTGCATTCACAGAGTTAAACTGAAATA
TAACCAGCTTAATAAGCATATGGTACTCTAAATGATAAAAATATAGCCAAAGTAAAACAG
GTGGCTTTGTGGTATTAAGACTAAGGAGTTAACACAAAAGATTATTTGTAACCTATATTC
AGAAAAAAAATGTCAGTAGTTAAAATGGAAAATAAGAGATCAAAATGAATATAACATAGG
AATAATGTTTGACCAGAAACTGCTTTTGTTTCTAGGGATGTTAAGAAAGTCTTGTTCTTT
GGTTTATTTTACTGTTTTGATTGTGATCATGTATATGAATCCTGATAATCATAAAACTTT
CTCAAACTTATTGAAAACCTCATAAAATTAACCTATTTACCTTTTTATGCAATTTATGCA
ATTTTAATAGGGTCTTCCTTTGCCAAGGGTATGTATTATTGTGAAAGTAAAGCCTCACAA
AGTGAAATAAATTCTACTGCATACCTTTAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|16359003|gb|AAH15966.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16359003|gb|AAH15966.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               344-574, - strand, RNAz p=0.788342

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               344-574, - strand, RNAz p=0.788342

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               221-994, gnl|bosTau2|chr18 (43662990-43663751)
               

               
               221-994, gnl|Hg17|chr3 (6789814-6789121)
               


               
               304-552, gnl|bosTau2|chr16 (49196584-49196340)
               

               
               304-552, gnl|Hg17|chr5 (68560791-68561023)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-994, gnl|bosTau2|chr18 (43662990-43663751)
               

               
               221-994, gnl|Hg17|chr3 (6789814-6789121)
               


               
               304-552, gnl|bosTau2|chr16 (49196584-49196340)
               

               
               304-552, gnl|Hg17|chr5 (68560791-68561023)

Expressed library(ies): 44 entry(ies)

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Expressed library(ies): 44 entry(ies)

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               cbe (1.67464)
               

               
               vin (1.33023)
               

               
               bfe (1.049)
               

               
               cte (0.87822)
               

               
               hlv (0.696282)
               

               
               ssp (0.677599)
               

               
               lin (0.436808)
               

               
               hea (0.408998)
               

               
               cmu (0.372787)
               

               
               fty (0.351679)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 44 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.67464)
               

               
               vin (1.33023)
               

               
               bfe (1.049)
               

               
               cte (0.87822)
               

               
               hlv (0.696282)
               

               
               ssp (0.677599)
               

               
               lin (0.436808)
               

               
               hea (0.408998)
               

               
               cmu (0.372787)
               

               
               fty (0.351679)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	221-994, gnl\|bosTau2\|chr18 (43662990-43663751)
	221-994, gnl\|Hg17\|chr3 (6789814-6789121)

	304-552, gnl\|bosTau2\|chr16 (49196584-49196340)
	304-552, gnl\|Hg17\|chr5 (68560791-68561023)

	cbe (1.67464)
	vin (1.33023)
	bfe (1.049)
	cte (0.87822)
	hlv (0.696282)
	ssp (0.677599)
	lin (0.436808)
	hea (0.408998)
	cmu (0.372787)
	fty (0.351679)
	fco (0.314416)
	sme (0.305437)
	isp (0.300752)
	ski (0.29347)
	kid (0.259471)
	ova (0.258264)
	ret (0.257467)
	thg (0.253582)
	fcc (0.197785)
	ldo (0.194005)
	mgm (0.180343)
	sto (0.179824)
	fbs (0.175346)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	tbr (0.154178)
	spl (0.143184)
	lnt (0.142308)
	cst (0.140036)
	ste (0.135208)
	lyg (0.133103)
	nmm (0.132802)
	sug (0.127291)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	cbl (0.114797)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)