Ss1.1-Pig4-TMW8050H21.3
|
TCCCGCACCAACCGAGGGGGCCGGCCACCTCGCGGCGGGTCGGGGCTGCCGCCGCGGGGG
CGGGGCGCAGAGATGGCGGACGGGGTCGCGGGCAAGGACAAGTGCGGGGAGCCTCGGCTG
GTGTCGCTGCCCCTGTCCCGCATCCGGGTCATCATGAAGAGCTCCCCCGAGGTGTCCAGC
ATCAACCAGGAGGCGCTGGTGCTCACGGCCAAGGCCACGGAACTCTTTGTTCAGTATCTA
GCCACCTATTCCTACCGACATGGCAGTGGAAGAGAAAAGAAAGCTCTCACTTACAGTGAT
TTATCAAACACTGCAGAGGAGTCGGAAACTTTTCAGTTTCTTGCAGACATATTACCAAAG
AAGATTTTAGCTAGTAAATATCTGAAAATGCTTAAAGAGAAGAGGGGAGAAGAGGAGGAG
AATGACGACGACGACGATGAGAGTGATGATGAAGCGGAATCCTAAGCCAAAAAGAAATGC
GTTAGTGACCGGCCGGGGAGCACGGCTCCGGGATGAACACCTTTGCTCCGAGCAAGCGTC
TGCTCACTCTCGAGACACCCCAGGGACACCACGTTCCTTCCTGGCTGAGATGGGGCGTGA
GGTGCCTCTGCTGTAAATAGCCCAAAGCAGAGCGTCTCTTTCCCAGGCCCACGCTGCAAC
CGGAGTGGGGGTCCAAACAAGGGGCTGCGAGCTGGGGTCACAGCCAGTCTGCAGCTCTAA
GCCGTTGAGGCCAAGGCAGCTTTGCTTAGCTTTGTAGCTTACAGATAGATTTTGAAGAAC
TTCTAAATATCAGTTGTATAAATTCACATGTGTATATTTTGAAATTAGTTTTTGTAAACA
GCCAGATCCGGTTTTAGCTAAAATACGTGGTCTATGGGTAGTATGTTACATCTGAATTTT
TGTATTTCAAGAAAATTTGTTTGGCTTTGTATTTGTTCAAATATTGCATTTTTTTAAACT
GTAAAGAAATAACTTTTTAAATTAAAAGCTAGACTTTTTACAGTAAAGTGTTTTATGGAA
CTAGTTTTATTAAAACCCTTTATT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCCCGCACCAACCGAGGGGGCCGGCCACCTCGCGGCGGGTCGGGGCTGCCGCCGCGGGGG
CGGGGCGCAGAGATGGCGGACGGGGTCGCGGGCAAGGACAAGTGCGGGGAGCCTCGGCTG
GTGTCGCTGCCCCTGTCCCGCATCCGGGTCATCATGAAGAGCTCCCCCGAGGTGTCCAGC
ATCAACCAGGAGGCGCTGGTGCTCACGGCCAAGGCCACGGAACTCTTTGTTCAGTATCTA
GCCACCTATTCCTACCGACATGGCAGTGGAAGAGAAAAGAAAGCTCTCACTTACAGTGAT
TTATCAAACACTGCAGAGGAGTCGGAAACTTTTCAGTTTCTTGCAGACATATTACCAAAG
AAGATTTTAGCTAGTAAATATCTGAAAATGCTTAAAGAGAAGAGGGGAGAAGAGGAGGAG
AATGACGACGACGACGATGAGAGTGATGATGAAGCGGAATCCTAAGCCAAAAAGAAATGC
GTTAGTGACCGGCCGGGGAGCACGGCTCCGGGATGAACACCTTTGCTCCGAGCAAGCGTC
TGCTCACTCTCGAGACACCCCAGGGACACCACGTTCCTTCCTGGCTGAGATGGGGCGTGA
GGTGCCTCTGCTGTAAATAGCCCAAAGCAGAGCGTCTCTTTCCCAGGCCCACGCTGCAAC
CGGAGTGGGGGTCCAAACAAGGGGCTGCGAGCTGGGGTCACAGCCAGTCTGCAGCTCTAA
GCCGTTGAGGCCAAGGCAGCTTTGCTTAGCTTTGTAGCTTACAGATAGATTTTGAAGAAC
TTCTAAATATCAGTTGTATAAATTCACATGTGTATATTTTGAAATTAGTTTTTGTAAACA
GCCAGATCCGGTTTTAGCTAAAATACGTGGTCTATGGGTAGTATGTTACATCTGAATTTT
TGTATTTCAAGAAAATTTGTTTGGCTTTGTATTTGTTCAAATATTGCATTTTTTTAAACT
GTAAAGAAATAACTTTTTAAATTAAAAGCTAGACTTTTTACAGTAAAGTGTTTTATGGAA
CTAGTTTTATTAAAACCCTTTATT
|
|
gi|61856386|ref|XP_588182.1| |
Protein identifier
|
gi|61856386|ref|XP_588182.1| |
|
1-220, gnl|bosTau2|chr14 (2871506-2871731) |
|
1-220, gnl|canFam2|chr16 (35969590-35969406) |
|
1-220, gnl|dasNov1|scaffold_3462 (27890-28056) |
|
1-220, gnl|echTel1|scaffold_316236 (6115-5957) |
|
1-220, gnl|hg17|chr8 (74586305-74586494) |
|
1-220, gnl|Hg17|chr8 (141590697-141590928) |
|
1-220, gnl|loxAfr1|scaffold_11459 (32430-32626) |
|
1-220, gnl|mm7|chr15 (73170326-73170144) |
|
1-220, gnl|Mm7|chr15 (73170115-73170327) |
|
1-220, gnl|monDom2|scaffold_8 (81205463-81205290) |
|
1-220, gnl|oryCun1|scaffold_149956 (10427-10584) |
|
1-220, gnl|panTro1|chr7 (76623270-76623459) |
|
1-220, gnl|rheMac2|chr8 (76011953-76012142) |
|
1-220, gnl|rn3|chr7 (110845954-110845777) |
| |
|
345-999, gnl|bosTau2|chr14 (2874194-2874838) |
|
345-999, gnl|Hg17|chr8 (141594405-141595048) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-220, gnl|bosTau2|chr14 (2871506-2871731) |
|
1-220, gnl|canFam2|chr16 (35969590-35969406) |
|
1-220, gnl|dasNov1|scaffold_3462 (27890-28056) |
|
1-220, gnl|echTel1|scaffold_316236 (6115-5957) |
|
1-220, gnl|hg17|chr8 (74586305-74586494) |
|
1-220, gnl|Hg17|chr8 (141590697-141590928) |
|
1-220, gnl|loxAfr1|scaffold_11459 (32430-32626) |
|
1-220, gnl|mm7|chr15 (73170326-73170144) |
|
1-220, gnl|Mm7|chr15 (73170115-73170327) |
|
1-220, gnl|monDom2|scaffold_8 (81205463-81205290) |
|
1-220, gnl|oryCun1|scaffold_149956 (10427-10584) |
|
1-220, gnl|panTro1|chr7 (76623270-76623459) |
|
1-220, gnl|rheMac2|chr8 (76011953-76012142) |
|
1-220, gnl|rn3|chr7 (110845954-110845777) |
| |
|
345-999, gnl|bosTau2|chr14 (2874194-2874838) |
|
345-999, gnl|Hg17|chr8 (141594405-141595048) |
|
cut (0.679694) |
|
cte (0.58548) |
|
cje (0.330469) |
|
fat (0.294855) |
|
med (0.232504) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
gul (0.177588) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cki (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
lin (0.145603) |
|
spl (0.143184) |
|
pty (0.142714) |
|
csk (0.140746) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
ova (0.129132) |
|
cly (0.120642) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
cut (0.679694) |
|
cte (0.58548) |
|
cje (0.330469) |
|
fat (0.294855) |
|
med (0.232504) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
gul (0.177588) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cki (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
lin (0.145603) |
|
spl (0.143184) |
|
pty (0.142714) |
|
csk (0.140746) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
ova (0.129132) |
|
cly (0.120642) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
