Ss1.1-Pig4-TMW8050H23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAAAAAAAAAAAAGGGAAAAGAAAGAGAAAAAGGAGGGATAGTGGAGCGCAGGGCTTC GGCCGCCACCCACACGCAGCGTCCTCGCCTCATCGCGGTCACGGCCGCCGCCCTCGGCCC CCCGCCACTCCCGGGTGGCCCAGCCCTCGGACCCCGCGACCGGCAGGGCGCTGCCCGCCG GCGGGGACCTCAGGGATCATGGCCCAAGTCGCAATGTCCACCCTGCCCGTCGAAAACGAG GAGTCCTCGGACAGCAGGATGGTGGTGACATTCCTCGTGTCTGCGCTGGAGTCCATGTGT AAAGAGCTGGCCAAGTCCAAAGCAGAGGTGGCCTGCATCGCAATGTATGAGGCAGACGTG TTTGTCGTGGGCACGGAGAAGGGACGTGCTTTTGTGAACGCCAGGACGGATCTGCAGAAG GATTTTGCAAAATACTGTGTTGCCGAAGGGCTGCCCGAGGTGAAACCCCCCCATCCTGTC AACAGGATGCAGATCGACTCAGGGGAAACGGAAATACTCAGAAAAGCCGTGGAGGACTAT TTCTGCTTTTGTTACGGTAAAGCCCTGGGGACGACGGCGATGGTGCCTGTTCCGTATGAG AAGCTGCTGAAGGACCAGGCAGCCGTGGTGGTGCAGGGGCTCCCAGAAGGGGTCCCCTTT CAACACCCTGAGAACTACGACCTTGCAACCCTGAAGTGGATTTTGGAGAACAAAGCGGGG ATTTCGTTCACCATCAATAGGCCTTTCCTAGGTTCAGTGAATCCACCAGGCGGACCAGGG GTGGTGACAGATGCTGTGAGATCTGTGACATCACCAAGTGAAAGTTGTGTCCCCATCAAC GTGAAGACAGAACCCATGGAAGATTCCGGCATTTCACTGAAAGCAGCAGCTGTGTCAGTC AAGAAAGAATCAGAAGATCCTAATTACTATCAGTATAATATGCAAGACAGCCATCATTCC TCTGCAAGCAATGAAGTAATAGAAATGGAGTTACCAATGGAAGAGTCTACTCAGCCTGTC CCTTCAGAAACGAGTGAGGACGCTGAAGCTGAGGTGAAAATCGAAGGAAACACCAATTCA TCCACTCTTACCAATTCTGCAGTGGGTGTTGAAGATCTTAACATTGTCCAGGTGACAGTC CCAGATAACGAGAAGGAAAAATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAAAAAAAAAAAAGGGAAAAGAAAGAGAAAAAGGAGGGATAGTGGAGCGCAGGGCTTC GGCCGCCACCCACACGCAGCGTCCTCGCCTCATCGCGGTCACGGCCGCCGCCCTCGGCCC CCCGCCACTCCCGGGTGGCCCAGCCCTCGGACCCCGCGACCGGCAGGGCGCTGCCCGCCG GCGGGGACCTCAGGGATCATGGCCCAAGTCGCAATGTCCACCCTGCCCGTCGAAAACGAG GAGTCCTCGGACAGCAGGATGGTGGTGACATTCCTCGTGTCTGCGCTGGAGTCCATGTGT AAAGAGCTGGCCAAGTCCAAAGCAGAGGTGGCCTGCATCGCAATGTATGAGGCAGACGTG TTTGTCGTGGGCACGGAGAAGGGACGTGCTTTTGTGAACGCCAGGACGGATCTGCAGAAG GATTTTGCAAAATACTGTGTTGCCGAAGGGCTGCCCGAGGTGAAACCCCCCCATCCTGTC AACAGGATGCAGATCGACTCAGGGGAAACGGAAATACTCAGAAAAGCCGTGGAGGACTAT TTCTGCTTTTGTTACGGTAAAGCCCTGGGGACGACGGCGATGGTGCCTGTTCCGTATGAG AAGCTGCTGAAGGACCAGGCAGCCGTGGTGGTGCAGGGGCTCCCAGAAGGGGTCCCCTTT CAACACCCTGAGAACTACGACCTTGCAACCCTGAAGTGGATTTTGGAGAACAAAGCGGGG ATTTCGTTCACCATCAATAGGCCTTTCCTAGGTTCAGTGAATCCACCAGGCGGACCAGGG GTGGTGACAGATGCTGTGAGATCTGTGACATCACCAAGTGAAAGTTGTGTCCCCATCAAC GTGAAGACAGAACCCATGGAAGATTCCGGCATTTCACTGAAAGCAGCAGCTGTGTCAGTC AAGAAAGAATCAGAAGATCCTAATTACTATCAGTATAATATGCAAGACAGCCATCATTCC TCTGCAAGCAATGAAGTAATAGAAATGGAGTTACCAATGGAAGAGTCTACTCAGCCTGTC CCTTCAGAAACGAGTGAGGACGCTGAAGCTGAGGTGAAAATCGAAGGAAACACCAATTCA TCCACTCTTACCAATTCTGCAGTGGGTGTTGAAGATCTTAACATTGTCCAGGTGACAGTC CCAGATAACGAGAAGGAAAAATTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-194, gnl|bosTau2|chr25 (28874777-28874581) | |
| 1-194, gnl|dasNov1|scaffold_57079 (3682-3901) | |
| 1-194, gnl|hg17|chr7 (73712173-73712452) | |
| 1-194, gnl|Hg17|chr7 (73712519-73712313) | |
| 1-194, gnl|mm7|chr5 (133433521-133433328) | |
| 1-194, gnl|panTro1|chr6 (75458797-75459076) | |
| 1-194, gnl|rn3|chr12 (23553286-23553491) | |
| 297-438, gnl|bosTau2|chr25 (28857875-28857734) | |
| 297-438, gnl|canFam2|chr6 (8670382-8670199) | |
| 297-438, gnl|dasNov1|scaffold_25887 (919-736) | |
| 297-438, gnl|echTel1|scaffold_267125 (2582-2398) | |
| 297-438, gnl|galGal2|chr19 (2470434-2470618) | |
| 297-438, gnl|hg17|chr7 (72138629-72138811) | |
| 297-438, gnl|Hg17|chr7 (73692718-73692577) | |
| 297-438, gnl|loxAfr1|scaffold_74493 (30527-30345) | |
| 297-438, gnl|mm7|chr5 (133441963-133441799) | |
| 297-438, gnl|Mm7|chr5 (133543065-133542924) | |
| 297-438, gnl|monDom2|scaffold_81 (6482193-6482374) | |
| 297-438, gnl|oryCun1|scaffold_82595 (6071-5889) | |
| 297-438, gnl|panTro1|chr6 (75298722-75298554) | |
| 297-438, gnl|rheMac2|chr3 (52141891-52141709) | |
| 297-438, gnl|rn3|chr12 (23351891-23351710) | |
| 297-438, gnl|xenTro1|scaffold_21 (2960673-2960487) | |
| 543-741, gnl|bosTau2|chr25 (30296429-30296229) | |
| 543-741, gnl|canFam2|chr6 (8675993-8675781) | |
| 543-741, gnl|dasNov1|scaffold_25887 (12869-12665) | |
| 543-741, gnl|echTel1|scaffold_183194 (2078-2288) | |
| 543-741, gnl|galGal2|chr19 (2460535-2460744) | |
| 543-741, gnl|hg17|chr7 (72127863-72128072) | |
| 543-741, gnl|Hg17|chr7 (73983573-73983772) | |
| 543-741, gnl|loxAfr1|scaffold_19736 (4028-4238) | |
| 543-741, gnl|mm7|chr5 (133445781-133445573) | |
| 543-741, gnl|Mm7|chr5 (133445572-133445772) | |
| 543-741, gnl|monDom2|scaffold_81 (6477529-6477746) | |
| 543-741, gnl|oryCun1|scaffold_97957 (5216-5425) | |
| 543-741, gnl|panTro1|chr6 (75428215-75428424) | |
| 543-741, gnl|rheMac2|chr3 (52151541-52151324) | |
| 543-741, gnl|rn3|chr12 (23358580-23358377) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-194, gnl|bosTau2|chr25 (28874777-28874581) | |
| 1-194, gnl|dasNov1|scaffold_57079 (3682-3901) | |
| 1-194, gnl|hg17|chr7 (73712173-73712452) | |
| 1-194, gnl|Hg17|chr7 (73712519-73712313) | |
| 1-194, gnl|mm7|chr5 (133433521-133433328) | |
| 1-194, gnl|panTro1|chr6 (75458797-75459076) | |
| 1-194, gnl|rn3|chr12 (23553286-23553491) | |
| 297-438, gnl|bosTau2|chr25 (28857875-28857734) | |
| 297-438, gnl|canFam2|chr6 (8670382-8670199) | |
| 297-438, gnl|dasNov1|scaffold_25887 (919-736) | |
| 297-438, gnl|echTel1|scaffold_267125 (2582-2398) | |
| 297-438, gnl|galGal2|chr19 (2470434-2470618) | |
| 297-438, gnl|hg17|chr7 (72138629-72138811) | |
| 297-438, gnl|Hg17|chr7 (73692718-73692577) | |
| 297-438, gnl|loxAfr1|scaffold_74493 (30527-30345) | |
| 297-438, gnl|mm7|chr5 (133441963-133441799) | |
| 297-438, gnl|Mm7|chr5 (133543065-133542924) | |
| 297-438, gnl|monDom2|scaffold_81 (6482193-6482374) | |
| 297-438, gnl|oryCun1|scaffold_82595 (6071-5889) | |
| 297-438, gnl|panTro1|chr6 (75298722-75298554) | |
| 297-438, gnl|rheMac2|chr3 (52141891-52141709) | |
| 297-438, gnl|rn3|chr12 (23351891-23351710) | |
| 297-438, gnl|xenTro1|scaffold_21 (2960673-2960487) | |
| 543-741, gnl|bosTau2|chr25 (30296429-30296229) | |
| 543-741, gnl|canFam2|chr6 (8675993-8675781) | |
| 543-741, gnl|dasNov1|scaffold_25887 (12869-12665) | |
| 543-741, gnl|echTel1|scaffold_183194 (2078-2288) | |
| 543-741, gnl|galGal2|chr19 (2460535-2460744) | |
| 543-741, gnl|hg17|chr7 (72127863-72128072) | |
| 543-741, gnl|Hg17|chr7 (73983573-73983772) | |
| 543-741, gnl|loxAfr1|scaffold_19736 (4028-4238) | |
| 543-741, gnl|mm7|chr5 (133445781-133445573) | |
| 543-741, gnl|Mm7|chr5 (133445572-133445772) | |
| 543-741, gnl|monDom2|scaffold_81 (6477529-6477746) | |
| 543-741, gnl|oryCun1|scaffold_97957 (5216-5425) | |
| 543-741, gnl|panTro1|chr6 (75428215-75428424) | |
| 543-741, gnl|rheMac2|chr3 (52151541-52151324) | |
| 543-741, gnl|rn3|chr12 (23358580-23358377) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) | |
| ldo (0.0970026) |