Non-Coding RNA Search

Ss1.1-Pig4-TMW8050I03.3

Sequence:


               
               AATTTTTTTAGCTTTTTATTATGAAAAATCTCAAATATACACAAAAGTAAAGTGTAGAGT
GAACCCCACATATCATCCAGATTCAACAGTTACCAAGATCGTACCCCCCGCCCCCATTAC
TTCATCTGGGAACTTAATTATTCTTAAGCATGAAGATCCATGAGTTGAACAAGTGTTGTT
TCCATTATTTTACATGACTCTGCTAGAGCAAGAAAGGGAGAGAAGAGGTGCCTTGGGCTT
TGACCTGTGGTGGGGAGGGTCTGCGCTTCCACATGGTGAATGATGAGCATCCTTGGCCTA
CCAGCCATTTCTATGCAGTGCCTCCTTGCTCAATCGGGTACTTCCAGCATCCCCTTCAGA
GACGGTCATTTTCACTTTCCCACTTGGAGTATCAGGGCTCGTGGAAACTCCTTAATGCGG
GAAGCCCATGACGCTTCGTAGGTAATACACACAGGCTCCTGGGAGGGCGGGGAGGTGAGG
GGCTGGTAGTCTGCACCTAGGCGGAACTGTGTCGCTCCCATCCTCGCGCAGTTCGGTGAG
AGGCCTGCCCTAGGAAACCGTAAACATACCTCTTTTGTATCGCTTCCCTTTAAAGGCATT
TGATGCCCCCGGTGAAGAAAAGCCAACAACAGCAAAGCTTGATGGAGAGCATGCAGCCCG
GGAAGCCCAGTGACTGGGAGATGGAGGGCAGAAAGCACGAGAGGCCCGAGAGCCTCCTGG
CGCCGGCGCAGTTCTGTACCGCTGAGCAGGACGTGAAGGCGCTCGCCGGGCCCCTGCAGG
CCATCCCGGAGATGGACTTCGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTTTTAGCTTTTTATTATGAAAAATCTCAAATATACACAAAAGTAAAGTGTAGAGT
GAACCCCACATATCATCCAGATTCAACAGTTACCAAGATCGTACCCCCCGCCCCCATTAC
TTCATCTGGGAACTTAATTATTCTTAAGCATGAAGATCCATGAGTTGAACAAGTGTTGTT
TCCATTATTTTACATGACTCTGCTAGAGCAAGAAAGGGAGAGAAGAGGTGCCTTGGGCTT
TGACCTGTGGTGGGGAGGGTCTGCGCTTCCACATGGTGAATGATGAGCATCCTTGGCCTA
CCAGCCATTTCTATGCAGTGCCTCCTTGCTCAATCGGGTACTTCCAGCATCCCCTTCAGA
GACGGTCATTTTCACTTTCCCACTTGGAGTATCAGGGCTCGTGGAAACTCCTTAATGCGG
GAAGCCCATGACGCTTCGTAGGTAATACACACAGGCTCCTGGGAGGGCGGGGAGGTGAGG
GGCTGGTAGTCTGCACCTAGGCGGAACTGTGTCGCTCCCATCCTCGCGCAGTTCGGTGAG
AGGCCTGCCCTAGGAAACCGTAAACATACCTCTTTTGTATCGCTTCCCTTTAAAGGCATT
TGATGCCCCCGGTGAAGAAAAGCCAACAACAGCAAAGCTTGATGGAGAGCATGCAGCCCG
GGAAGCCCAGTGACTGGGAGATGGAGGGCAGAAAGCACGAGAGGCCCGAGAGCCTCCTGG
CGCCGGCGCAGTTCTGTACCGCTGAGCAGGACGTGAAGGCGCTCGCCGGGCCCCTGCAGG
CCATCCCGGAGATGGACTTCGAGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-804, gnl|bosTau2|chr11 (15815189-15814386)
               

               
               4-804, gnl|Hg17|chr2 (39098096-39098841)
               

               
               4-804, gnl|Mm7|chr17 (78668045-78668913)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-804, gnl|bosTau2|chr11 (15815189-15814386)
               

               
               4-804, gnl|Hg17|chr2 (39098096-39098841)
               

               
               4-804, gnl|Mm7|chr17 (78668045-78668913)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cki (0.330469)
               

               
               hyp (0.285673)
               

               
               duo (0.172801)
               

               
               spl (0.143184)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               hyp (0.285673)
               

               
               duo (0.172801)
               

               
               spl (0.143184)

	4-804, gnl\|bosTau2\|chr11 (15815189-15814386)
	4-804, gnl\|Hg17\|chr2 (39098096-39098841)
	4-804, gnl\|Mm7\|chr17 (78668045-78668913)