Non-Coding RNA Search

Ss1.1-Pig4-TMW8050I04.3

Sequence:


               
               TTTCCTTTTATCATGGGGGGCATATACAGTATCAGTGTTTTCCCGGATACAAGCTCCATG
GAAGTCCTTCCAGAAGGTGTCTCTCCAATAACTCCTGGAGTGGCAGCCCACCTTCCTGCC
TGCCTTGCAGGTGTTCCACACCAGTAATTCAAAATGGAGCCATCAACGGGACAGATTTTG
GTTGTGGAAAGGCAGCTCGGATTCGGTGCTTCAAAGGCTTCCAGCTCCTGGGACTTTCAG
AAATCACCTGTGAAGCCAATGGCCAGTGGAGCACTAGCTTCCCAAGCTGTGAACACACTT
TTTGCGGTTCCCCCCCAGTGATACCAAATGCATTCGTCAGTGAGAGTGGTTCTTCGCAGG
AAAATGTGATAACTTACAACTGCAGGTCCGGGTATGTAATGCAAGGCAGTTCAGATCTGA
CTTGTACAGAGAAAGGGACATGGAGCCAGCCTTATCCAGTCTGCGAGCCCCTGTCCTGTG
GACCCCCACCATCTGTTCCCAATGCCGTGGCCACTGGAGAGGCACACACCTATGAAAGTA
AAGTGAGACTCAGGTGTCTGGAAGGTTATATGATGGATACAGATATAGATACATTCACCT
GTCAGAAAGATGGCCATTGGTTCCCTGAGAGAATCTCCTGCAGCCCTAAAAAATGTCCTC
TGCCAGCAAACCTAACACATATAATTGTTCATGGGGATGATTTCAGTGTAAATAAGCAAG
TTTCTGTGTCATGTGCAGAAGGGTATACCTATGAGGGAGTTAATATATCAACCTGTCAGC
TGGATGGCACCTGGGAGCCACTATTTTCTGATGAATCCTGCAGTCCAGTTTCTTGTGGGA
AACCTGAAAGTCCAGAACATGGGTTTGTGTTTGGCAGTGAATACAGCTTTGAAAGCACAA
TTGTTTATCGCTGTGAAACTGGCTATGAACTAGAGGGGAGCAGGGAACGGGTCTGTCAGG
AGAACGGACAGTGGAGTGGAGGGGTGGCGACATGCAAAAAGACCAGGTGTGAAGCTCCAC
CTGAATTTCTGAATGGAAAAGCTGAAGTTGAAAACAGTACCGCTGGACTCAGCGTGGTCT
ATTCCTGCAACAGAGGCTACAGCCTTGAAGGGGTGCCTGAGGCCTCCTGCACTGAAAATG
AGACTTGGAGCCACCCAGTTCCTCTCTGCAAACCAAATCCGTGCCCTGTCCCTTTTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCTTTTATCATGGGGGGCATATACAGTATCAGTGTTTTCCCGGATACAAGCTCCATG
GAAGTCCTTCCAGAAGGTGTCTCTCCAATAACTCCTGGAGTGGCAGCCCACCTTCCTGCC
TGCCTTGCAGGTGTTCCACACCAGTAATTCAAAATGGAGCCATCAACGGGACAGATTTTG
GTTGTGGAAAGGCAGCTCGGATTCGGTGCTTCAAAGGCTTCCAGCTCCTGGGACTTTCAG
AAATCACCTGTGAAGCCAATGGCCAGTGGAGCACTAGCTTCCCAAGCTGTGAACACACTT
TTTGCGGTTCCCCCCCAGTGATACCAAATGCATTCGTCAGTGAGAGTGGTTCTTCGCAGG
AAAATGTGATAACTTACAACTGCAGGTCCGGGTATGTAATGCAAGGCAGTTCAGATCTGA
CTTGTACAGAGAAAGGGACATGGAGCCAGCCTTATCCAGTCTGCGAGCCCCTGTCCTGTG
GACCCCCACCATCTGTTCCCAATGCCGTGGCCACTGGAGAGGCACACACCTATGAAAGTA
AAGTGAGACTCAGGTGTCTGGAAGGTTATATGATGGATACAGATATAGATACATTCACCT
GTCAGAAAGATGGCCATTGGTTCCCTGAGAGAATCTCCTGCAGCCCTAAAAAATGTCCTC
TGCCAGCAAACCTAACACATATAATTGTTCATGGGGATGATTTCAGTGTAAATAAGCAAG
TTTCTGTGTCATGTGCAGAAGGGTATACCTATGAGGGAGTTAATATATCAACCTGTCAGC
TGGATGGCACCTGGGAGCCACTATTTTCTGATGAATCCTGCAGTCCAGTTTCTTGTGGGA
AACCTGAAAGTCCAGAACATGGGTTTGTGTTTGGCAGTGAATACAGCTTTGAAAGCACAA
TTGTTTATCGCTGTGAAACTGGCTATGAACTAGAGGGGAGCAGGGAACGGGTCTGTCAGG
AGAACGGACAGTGGAGTGGAGGGGTGGCGACATGCAAAAAGACCAGGTGTGAAGCTCCAC
CTGAATTTCTGAATGGAAAAGCTGAAGTTGAAAACAGTACCGCTGGACTCAGCGTGGTCT
ATTCCTGCAACAGAGGCTACAGCCTTGAAGGGGTGCCTGAGGCCTCCTGCACTGAAAATG
AGACTTGGAGCCACCCAGTTCCTCTCTGCAAACCAAATCCGTGCCCTGTCCCTTTTGTGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-555, gnl|bosTau2|chr8 (53912425-53912979)
               

               
               1-555, gnl|Hg17|chr9 (110248547-110247993)
               

               
               1-555, gnl|Mm7|chr4 (58110295-58109744)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-555, gnl|bosTau2|chr8 (53912425-53912979)
               

               
               1-555, gnl|Hg17|chr9 (110248547-110247993)
               

               
               1-555, gnl|Mm7|chr4 (58110295-58109744)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-555, gnl\|bosTau2\|chr8 (53912425-53912979)
	1-555, gnl\|Hg17\|chr9 (110248547-110247993)
	1-555, gnl\|Mm7\|chr4 (58110295-58109744)