Non-Coding RNA Search

Ss1.1-Pig4-TMW8050I10.5

Sequence:


               
               CTTAGGCATTTTTCTGGTCTTACCTGACAGTTTCTGTGGGGAAAGATCTCAGTTTTCCTG
GAGTCACTTAGTCACGGAAGAAGAACGTTGCTTCTGTAAATTACTTTCAAAGTCAGGTCC
AAGAAATGCAGTATGTTAGAATAGAATTACTTTGCTCTAGTATTTCCATGTTGGCAAAAT
AAGGGGGGAAATACTATTTTTTTAAGAAAATTTATTTTAATATCCAAATTTAGAGGTTTA
AAAATGTTTTCATAGTTCGTGTTAGGATTTTTTTTAAATATTTCAAGCATTGGGTATTCC
AAAATAGTTCGATACTACTTTTATAGATTCTAAGGTTTTTTAAATAGATAACACCCCATT
TTAGAATATTTTGAGTGTTGAGAGATTTAATTTTCTGAGTCGTTAATTCTACTTCCTTAC
TTTTTAAGATCGGTTTTGAAAAATATTGACCTGAACATTTTAGTCTAACCAAGGAAGGTA
TTAGCTTAAGTGGTCAAAGCTTGCTGTCTGCAAGGAGAATTGATCCATTCATTATATATT
ATGGGAAGAAAAAAATCAAAGAAAGTTTTTAATGGAGATATGAAAATATTGTTTAGAGAG
ATATTTATTATGACATGTCTTAAAAACATATTTTTCTATTTTCAAAGTATTGTTTCTAGG
CCATATGTTTTATTGGCACTTCTGCAAATGATTTTGCAGTTTGGAAAGTGGTAATAAAAA
CTAGATTGTAAGTTAGGTTCAATGATATGTAAAAGATGCTGTGATTAGCACTGCCCCCAT
CTTACTCATTCTTGGCCGCCCTTGGCCCAATACCTTTATTCAGGACTGGCTCTTGGTATT
TCAGGTGACATAGAATTATTTTTAAAAAATAAAGTGTGGAGAGAGTTTGAAAAGCATAAA
AATCGTGCCTCTATAATTCGAGCAGCCACCAGATACATCTTGATTAATGGAGTAGTAAAT
ATAGCAGATATTTTAGTAAGTAGAAACCGTAGGAAGAAAAAAGATGACAGGGTCTCTGTA
GTCATTGAAAGGAGTAGGCGCTATTAACATCTTAACCAGGCAGCGATTGAAAACAATCTG
CATATGAAATTCAAAGTCCGATTTTGATTTCACTTTGAGTTTAGAAAATCAAATTTGAAA
AATTAAATCCTAATAAATGTTCAACTTTTAAATATTAAATATTTTTCATATTAAAGTTGA
ATTTGGGGGGCCACACCCGCAGCATGCTCAAGTTGAATTTTAAATCACCCAGTCTTACAG
AATTTGCAGGTGTGTAACATGTTCTAATCTTATCCAAGGTGTGTAACATGTTCTAATCTT
ATCCAAGAGAAAAGATTTGTGGTATTTTCAAGTTACGTATCTGTGATCCGGTAATGAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAGGCATTTTTCTGGTCTTACCTGACAGTTTCTGTGGGGAAAGATCTCAGTTTTCCTG
GAGTCACTTAGTCACGGAAGAAGAACGTTGCTTCTGTAAATTACTTTCAAAGTCAGGTCC
AAGAAATGCAGTATGTTAGAATAGAATTACTTTGCTCTAGTATTTCCATGTTGGCAAAAT
AAGGGGGGAAATACTATTTTTTTAAGAAAATTTATTTTAATATCCAAATTTAGAGGTTTA
AAAATGTTTTCATAGTTCGTGTTAGGATTTTTTTTAAATATTTCAAGCATTGGGTATTCC
AAAATAGTTCGATACTACTTTTATAGATTCTAAGGTTTTTTAAATAGATAACACCCCATT
TTAGAATATTTTGAGTGTTGAGAGATTTAATTTTCTGAGTCGTTAATTCTACTTCCTTAC
TTTTTAAGATCGGTTTTGAAAAATATTGACCTGAACATTTTAGTCTAACCAAGGAAGGTA
TTAGCTTAAGTGGTCAAAGCTTGCTGTCTGCAAGGAGAATTGATCCATTCATTATATATT
ATGGGAAGAAAAAAATCAAAGAAAGTTTTTAATGGAGATATGAAAATATTGTTTAGAGAG
ATATTTATTATGACATGTCTTAAAAACATATTTTTCTATTTTCAAAGTATTGTTTCTAGG
CCATATGTTTTATTGGCACTTCTGCAAATGATTTTGCAGTTTGGAAAGTGGTAATAAAAA
CTAGATTGTAAGTTAGGTTCAATGATATGTAAAAGATGCTGTGATTAGCACTGCCCCCAT
CTTACTCATTCTTGGCCGCCCTTGGCCCAATACCTTTATTCAGGACTGGCTCTTGGTATT
TCAGGTGACATAGAATTATTTTTAAAAAATAAAGTGTGGAGAGAGTTTGAAAAGCATAAA
AATCGTGCCTCTATAATTCGAGCAGCCACCAGATACATCTTGATTAATGGAGTAGTAAAT
ATAGCAGATATTTTAGTAAGTAGAAACCGTAGGAAGAAAAAAGATGACAGGGTCTCTGTA
GTCATTGAAAGGAGTAGGCGCTATTAACATCTTAACCAGGCAGCGATTGAAAACAATCTG
CATATGAAATTCAAAGTCCGATTTTGATTTCACTTTGAGTTTAGAAAATCAAATTTGAAA
AATTAAATCCTAATAAATGTTCAACTTTTAAATATTAAATATTTTTCATATTAAAGTTGA
ATTTGGGGGGCCACACCCGCAGCATGCTCAAGTTGAATTTTAAATCACCCAGTCTTACAG
AATTTGCAGGTGTGTAACATGTTCTAATCTTATCCAAGGTGTGTAACATGTTCTAATCTT
ATCCAAGAGAAAAGATTTGTGGTATTTTCAAGTTACGTATCTGTGATCCGGTAATGAGTG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               9-1031, gnl|bosTau2|chr3 (31755213-31754195)
               

               
               9-1031, gnl|Hg17|chr1 (108890944-108891987)
               

               
               9-1031, gnl|Mm7|chr3 (108792464-108791245)
               


               
               1041-1202, gnl|bosTau2|chr3 (31754066-31753912)
               

               
               1041-1202, gnl|Hg17|chr1 (108892124-108892265)
               

               
               1041-1202, gnl|Mm7|chr3 (108791119-108790975)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1031, gnl|bosTau2|chr3 (31755213-31754195)
               

               
               9-1031, gnl|Hg17|chr1 (108890944-108891987)
               

               
               9-1031, gnl|Mm7|chr3 (108792464-108791245)
               


               
               1041-1202, gnl|bosTau2|chr3 (31754066-31753912)
               

               
               1041-1202, gnl|Hg17|chr1 (108892124-108892265)
               

               
               1041-1202, gnl|Mm7|chr3 (108791119-108790975)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	9-1031, gnl\|bosTau2\|chr3 (31755213-31754195)
	9-1031, gnl\|Hg17\|chr1 (108890944-108891987)
	9-1031, gnl\|Mm7\|chr3 (108792464-108791245)

	1041-1202, gnl\|bosTau2\|chr3 (31754066-31753912)
	1041-1202, gnl\|Hg17\|chr1 (108892124-108892265)
	1041-1202, gnl\|Mm7\|chr3 (108791119-108790975)