Non-Coding RNA Search

Ss1.1-Pig4-TMW8050I18.3

Sequence:


               
               GGAATGCTGGTTTCCAAGAGCAAAGGTACACCCTCTGCTGCAGGGGCCTCTGGCCTGCTT
TCTTTCTGTTTGTAACCTAGCACTTCCTCTTGCCTCTTGGACTTGTTTCAGTTTACAGGC
TCCACCCCTACTGGGAGCAAGTGGGGTCTGGTTAGTTTGCAATAAGCACTTTGCAGTGGT
TCCTGTCAACCAGTCCCTAGTCTTAGTCCCAGCCTGTCTATGTGGACTCTGGCCCGGCCT
GTGCAGTGGCTTGCCCAGGGAGGGCGGGCAGCATGCAAGAGCCTCTGCAGAACTGTGTTT
ACACAACCGCATCGGGCAACGCCATTTCTCCCACGATGAAACTCTCCGGCTAAGATTACA
TGGCGTGGAAAGCCAGCGAGCAGGCAGCACCATGAACTGTTGTGGGGGTGGGGGGGCAGG
GGGCTATGTTCATTACTTTTTTTTTTAAAATAAGAAACACCAAAGAAAGCTGTGGAAAGG
AACTGCCCCACGGAGAAAAGTATAAGCAGGGAGGTGTGTAACATAAAGCATTAGAGCTCC
TTGGAGCACAGACTCCTGGGGTTCGTCTCCACTCTTAGAGCACAAACATTGATTTTTTTT
CCCCCCAAAGTCAGCTCTGTTAGGAAAGGGCAGAAGCTGTGATGAGCAGCTTTTCCAGGT
GAGGATACCCATCCACCTCTTCCATCACTGGCTCATCAATGGGACCAGTTTGATGTAAGC
AAGACATGGCCTGCACCTGTGGCCTTGAAGGAAGCACACGTCCTCTACCCATCTTCCTTC
TGCCCTGTTCCACTCCCCCATCTAGTCTGCAGCCTGGCCAGTGGCTCCCATAAAGCCTTA
TCCAGCCCCTCGTTGGCACTTGGGGCCGGAGAGGCTGTCTCCCCACTGGCCTGGGCTTTC
CCGTGAGTTAGGGCTCCGTCCTCAAGTCCTTTCAAGGCAAGGAAGCGAATAGCTGTGCAT
TTAGAGACACAGGCCCGACCTGTCACTCTCACTCATCTTCCAAAGGGGAGCTTCCCATTG
CCTGGGGGCGGGAAGAACCAAGACCTCCACTTGCTTCCAAGGTGCTAGGGAAAGTGTCAA
GGTCGTCGATTCTCATCTTCTCTCAGCTTTACAGGCCGAGTTTCGCGGGACTGCTGACTT
TTCTATTCTGTGACTGATTTCATGCCCGATGCTTCTGTTTTATTCCTGATCCTTTCTACT
ATGCATTTTCCTTTTATCAGGTGTACAAAGTTAAATACTGTGTATTTATCACTAAAAAGG
TACATGAACTTAAGAGAATATTAAGCCTTTGGTGTTTTTCCACAGATGTTTAAGCTTCTC
TGTAAACTTGAAATAAACAGCAAAATGGTGCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATGCTGGTTTCCAAGAGCAAAGGTACACCCTCTGCTGCAGGGGCCTCTGGCCTGCTT
TCTTTCTGTTTGTAACCTAGCACTTCCTCTTGCCTCTTGGACTTGTTTCAGTTTACAGGC
TCCACCCCTACTGGGAGCAAGTGGGGTCTGGTTAGTTTGCAATAAGCACTTTGCAGTGGT
TCCTGTCAACCAGTCCCTAGTCTTAGTCCCAGCCTGTCTATGTGGACTCTGGCCCGGCCT
GTGCAGTGGCTTGCCCAGGGAGGGCGGGCAGCATGCAAGAGCCTCTGCAGAACTGTGTTT
ACACAACCGCATCGGGCAACGCCATTTCTCCCACGATGAAACTCTCCGGCTAAGATTACA
TGGCGTGGAAAGCCAGCGAGCAGGCAGCACCATGAACTGTTGTGGGGGTGGGGGGGCAGG
GGGCTATGTTCATTACTTTTTTTTTTAAAATAAGAAACACCAAAGAAAGCTGTGGAAAGG
AACTGCCCCACGGAGAAAAGTATAAGCAGGGAGGTGTGTAACATAAAGCATTAGAGCTCC
TTGGAGCACAGACTCCTGGGGTTCGTCTCCACTCTTAGAGCACAAACATTGATTTTTTTT
CCCCCCAAAGTCAGCTCTGTTAGGAAAGGGCAGAAGCTGTGATGAGCAGCTTTTCCAGGT
GAGGATACCCATCCACCTCTTCCATCACTGGCTCATCAATGGGACCAGTTTGATGTAAGC
AAGACATGGCCTGCACCTGTGGCCTTGAAGGAAGCACACGTCCTCTACCCATCTTCCTTC
TGCCCTGTTCCACTCCCCCATCTAGTCTGCAGCCTGGCCAGTGGCTCCCATAAAGCCTTA
TCCAGCCCCTCGTTGGCACTTGGGGCCGGAGAGGCTGTCTCCCCACTGGCCTGGGCTTTC
CCGTGAGTTAGGGCTCCGTCCTCAAGTCCTTTCAAGGCAAGGAAGCGAATAGCTGTGCAT
TTAGAGACACAGGCCCGACCTGTCACTCTCACTCATCTTCCAAAGGGGAGCTTCCCATTG
CCTGGGGGCGGGAAGAACCAAGACCTCCACTTGCTTCCAAGGTGCTAGGGAAAGTGTCAA
GGTCGTCGATTCTCATCTTCTCTCAGCTTTACAGGCCGAGTTTCGCGGGACTGCTGACTT
TTCTATTCTGTGACTGATTTCATGCCCGATGCTTCTGTTTTATTCCTGATCCTTTCTACT
ATGCATTTTCCTTTTATCAGGTGTACAAAGTTAAATACTGTGTATTTATCACTAAAAAGG
TACATGAACTTAAGAGAATATTAAGCCTTTGGTGTTTTTCCACAGATGTTTAAGCTTCTC
TGTAAACTTGAAATAAACAGCAAAATGGTGCAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               606-717, - strand, RNAz p=0.573372
               

               
               793-950, - strand, RNAz p=0.993749

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               606-717, - strand, RNAz p=0.573372
               

               
               793-950, - strand, RNAz p=0.993749

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               860-946, + strand, RNAmicro p=0.999013

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               860-946, + strand, RNAmicro p=0.999013

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1354, gnl|bosTau2|chr17 (28206229-28204886)
               

               
               2-1354, gnl|Hg17|chr12 (120139537-120138215)
               

               
               2-1354, gnl|Mm7|chr5 (121966606-121965392)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1354, gnl|bosTau2|chr17 (28206229-28204886)
               

               
               2-1354, gnl|Hg17|chr12 (120139537-120138215)
               

               
               2-1354, gnl|Mm7|chr5 (121966606-121965392)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               che (0.68157)
               

               
               fce (0.543183)
               

               
               cbe (0.478469)
               

               
               fty (0.351679)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.68157)
               

               
               fce (0.543183)
               

               
               cbe (0.478469)
               

               
               fty (0.351679)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	606-717, - strand, RNAz p=0.573372
	793-950, - strand, RNAz p=0.993749

	2-1354, gnl\|bosTau2\|chr17 (28206229-28204886)
	2-1354, gnl\|Hg17\|chr12 (120139537-120138215)
	2-1354, gnl\|Mm7\|chr5 (121966606-121965392)

	che (0.68157)
	fce (0.543183)
	cbe (0.478469)
	fty (0.351679)
	ece (0.229305)
	nms (0.213858)
	hea (0.204499)
	nep (0.183925)
	fhi (0.169578)
	csp (0.161186)
	mga (0.160205)
	tbr (0.154178)
	lnt (0.142308)
	csk (0.140746)
	thg (0.126791)
	ebs (0.118301)
	ecc (0.115035)