Ss1.1-Pig4-TMW8050I21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCGTTTGGAACGGGAACAGGTCTCTTCGGGCAGACCAGTACTGGATTTGGTGCCGTTG GTTCGACCCTGTTTGGCAGCAACAAGCTTACGTCCTTTGGAACCAGCACAACCAGTGCGC CTTCATTTGGTACAACCAGTGGCGGGCTCTTTGGTTTCGGCACAAATACCAGTGGGAATA GTATTTTTGGAAGTAAACCAGGACCTGGAACTCTGGGACCTGGGCTTGGTGCAGGATTTG GAACAGCTCTTGGTGCTGGACAGGCATCTTTGTTTGGGAACAACCAGCCTAAGCTCGGAG GGCCTCTTGGTACAGGAGCCTTTGGGGCCCCTGGATTTAATACTACGACAGCCACTTTGG GCTTTGGAGCCCCCCAGGCTCCAGTAGCTTTAGCGGATCCAAATGCTTCTGCTGCACAGC AGGCAGTCCTCCAGCAGCACATCAATAGTCTGACATACTCACCTTTTGGAGACTCTCCTC TCTTCCGGAACCCTATGTCAGACCCTAAGAAGAAGGAAGAGAGATTGAAACCAACAAATC CAGCAGCCCAGAAGGCTCTCACAACTCCTACTCACTATAAACTGACTCCCCGCCCTGCCA CCAGAGTCCGACCGAAGGCTTTGCAGACAACAGGCACAGCCAAGTCACAACTCTTTGATG GGCTGGATGACGACGAGCCATCCTTAGCCAATGGAGCATTCATGCCCAAGAAGAGCATTA AGAAGTTGGTTTTGAAAAACCTTAACAGTAGCAATCTCTTCTCTCCCGTTAATCGTGATT CAGAAGATCTGGCTTCACCATCTGATTACCCAGAAAATGGAGAGAGATTCAATTTTATGA GCAAACCAGTGGAAGAGAACCATCAGCAGGATGGAGATGACGATTCTCTGGTGTCACGTT TTTATACTAACCCAATTGCCAAACCCATTCCTCAAACCCCAGAGAGTGCTGGGAATAAAC ACAACAGCAGCAACAGCGTGGATGACACCATTGTTGCGTTAAATATGCGTGCTGCCTTGC GAAATGGGCTGGAAGGAAGCAGTGAGGAAACCTCTTTTCATGAGGAGTCACTGCAGGATG ACCGCGAAGAGCTAGAAAATAATGCTTACCACATGCATCCTGCAGGCATTGTTCTTACTA AGGTTGGTTACTATACCATTCCCTCTATGGACGACCTTGCTAAGATCACCAATGAAAAAG GAGAGTGCGTTGTCTCTGACTTCACCATTGGTCGGAAAGGTTATGGTTCAATCTATTTTG AAGGAGATGTTAATTTGACAAATCTAAATTTGGATGATATTGTGCATATCCGAAGGAAGG AAGTGATTGTCTACTTAGACGATAACCAGAAACCACCTGTGGGCGAAGGCCTAAATAGGA AGGCCGAGGTTACGCTGGATGGAGTTTGGCCAACAGATAAAACATCTCGTTGTTTAATCA AAAGCCCAGATCGACTTGCTGACATAAACTATGAGGGAAGATTAGAAGCAGTTTCAAGGA AACAGGGAGCTCAGTTCAAAGAGTACCGTCCTGAAACAGGTTCTTGGGTGTTTAAGGTCT CCCATTTTTCTAAGTATGGCCTTCAGGATTCTGATGAAGAGGAGGAGGAACGGCCATCCA AAACTAGTACAAAGAAGTTGAAGACGGCCCCTTTGCCTCCTGCAGGCCAGGCCGCCCCAT TCCAGATGGCTCTTAATGGCAAACCAGCACCTCCACCCCAGGTAGAGACAGGACAGTGAG TTTGAATGGAGTCCCTGATCCGGAAGCTGAAAGCAAGTCCTTCAGCACAAAGCTGTTTGT GTCCCTGGAACTTTGAAGAGTACTGGTGTACTGGCAGTCGTGTTGACACGAGTATAAGGG AGGGCCTGAGGTGCTCCTGGCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCGTTTGGAACGGGAACAGGTCTCTTCGGGCAGACCAGTACTGGATTTGGTGCCGTTG GTTCGACCCTGTTTGGCAGCAACAAGCTTACGTCCTTTGGAACCAGCACAACCAGTGCGC CTTCATTTGGTACAACCAGTGGCGGGCTCTTTGGTTTCGGCACAAATACCAGTGGGAATA GTATTTTTGGAAGTAAACCAGGACCTGGAACTCTGGGACCTGGGCTTGGTGCAGGATTTG GAACAGCTCTTGGTGCTGGACAGGCATCTTTGTTTGGGAACAACCAGCCTAAGCTCGGAG GGCCTCTTGGTACAGGAGCCTTTGGGGCCCCTGGATTTAATACTACGACAGCCACTTTGG GCTTTGGAGCCCCCCAGGCTCCAGTAGCTTTAGCGGATCCAAATGCTTCTGCTGCACAGC AGGCAGTCCTCCAGCAGCACATCAATAGTCTGACATACTCACCTTTTGGAGACTCTCCTC TCTTCCGGAACCCTATGTCAGACCCTAAGAAGAAGGAAGAGAGATTGAAACCAACAAATC CAGCAGCCCAGAAGGCTCTCACAACTCCTACTCACTATAAACTGACTCCCCGCCCTGCCA CCAGAGTCCGACCGAAGGCTTTGCAGACAACAGGCACAGCCAAGTCACAACTCTTTGATG GGCTGGATGACGACGAGCCATCCTTAGCCAATGGAGCATTCATGCCCAAGAAGAGCATTA AGAAGTTGGTTTTGAAAAACCTTAACAGTAGCAATCTCTTCTCTCCCGTTAATCGTGATT CAGAAGATCTGGCTTCACCATCTGATTACCCAGAAAATGGAGAGAGATTCAATTTTATGA GCAAACCAGTGGAAGAGAACCATCAGCAGGATGGAGATGACGATTCTCTGGTGTCACGTT TTTATACTAACCCAATTGCCAAACCCATTCCTCAAACCCCAGAGAGTGCTGGGAATAAAC ACAACAGCAGCAACAGCGTGGATGACACCATTGTTGCGTTAAATATGCGTGCTGCCTTGC GAAATGGGCTGGAAGGAAGCAGTGAGGAAACCTCTTTTCATGAGGAGTCACTGCAGGATG ACCGCGAAGAGCTAGAAAATAATGCTTACCACATGCATCCTGCAGGCATTGTTCTTACTA AGGTTGGTTACTATACCATTCCCTCTATGGACGACCTTGCTAAGATCACCAATGAAAAAG GAGAGTGCGTTGTCTCTGACTTCACCATTGGTCGGAAAGGTTATGGTTCAATCTATTTTG AAGGAGATGTTAATTTGACAAATCTAAATTTGGATGATATTGTGCATATCCGAAGGAAGG AAGTGATTGTCTACTTAGACGATAACCAGAAACCACCTGTGGGCGAAGGCCTAAATAGGA AGGCCGAGGTTACGCTGGATGGAGTTTGGCCAACAGATAAAACATCTCGTTGTTTAATCA AAAGCCCAGATCGACTTGCTGACATAAACTATGAGGGAAGATTAGAAGCAGTTTCAAGGA AACAGGGAGCTCAGTTCAAAGAGTACCGTCCTGAAACAGGTTCTTGGGTGTTTAAGGTCT CCCATTTTTCTAAGTATGGCCTTCAGGATTCTGATGAAGAGGAGGAGGAACGGCCATCCA AAACTAGTACAAAGAAGTTGAAGACGGCCCCTTTGCCTCCTGCAGGCCAGGCCGCCCCAT TCCAGATGGCTCTTAATGGCAAACCAGCACCTCCACCCCAGGTAGAGACAGGACAGTGAG TTTGAATGGAGTCCCTGATCCGGAAGCTGAAAGCAAGTCCTTCAGCACAAAGCTGTTTGT GTCCCTGGAACTTTGAAGAGTACTGGTGTACTGGCAGTCGTGTTGACACGAGTATAAGGG AGGGCCTGAGGTGCTCCTGGCATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 245-1714, + strand, RNAz p=0.97898 | |
| 1238-1357, + strand, RNAz p=0.695693 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 245-1714, + strand, RNAz p=0.97898 | |
| 1238-1357, + strand, RNAz p=0.695693 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 245-387, gnl|bosTau2|chr15 (32868653-32868511) | |
| 245-387, gnl|Hg17|chr11 (3722457-3722315) | |
| 245-387, gnl|Mm7|chr7 (98215604-98215462) | |
| 520-710, gnl|bosTau2|chr15 (32861844-32861654) | |
| 520-710, gnl|canFam2|chr21 (29302506-29302710) | |
| 520-710, gnl|danRer3|chr21 (38325259-38325458) | |
| 520-710, gnl|dasNov1|scaffold_113299 (3790-3586) | |
| 520-710, gnl|echTel1|scaffold_319492 (136466-136264) | |
| 520-710, gnl|fr1|chrUn (296220506-296220289) | |
| 520-710, gnl|galGal2|chrUn (134067981-134067777) | |
| 520-710, gnl|hg17|chr11 (3709194-3709398) | |
| 520-710, gnl|Hg17|chr11 (3709386-3709196) | |
| 520-710, gnl|mm7|chr7 (98206637-98206836) | |
| 520-710, gnl|Mm7|chr7 (98206829-98206639) | |
| 520-710, gnl|monDom2|scaffold_74 (6863745-6863949) | |
| 520-710, gnl|oryCun1|scaffold_210944 (804-1008) | |
| 520-710, gnl|panTro1|chr9 (3852077-3852281) | |
| 520-710, gnl|rheMac2|chr14 (69816792-69816588) | |
| 520-710, gnl|rn3|chr1 (159726483-159726687) | |
| 520-710, gnl|tetNig1|chr7 (9832711-9832494) | |
| 825-1126, gnl|bosTau2|chr15 (32852441-32852140) | |
| 825-1126, gnl|Hg17|chr11 (3701263-3700962) | |
| 825-1126, gnl|Mm7|chr7 (98200194-98199893) | |
| 1238-1379, gnl|bosTau2|chr15 (32848679-32848538) | |
| 1238-1379, gnl|canFam2|chr21 (29288190-29288350) | |
| 1238-1379, gnl|danRer3|chr21 (38321250-38321408) | |
| 1238-1379, gnl|dasNov1|scaffold_22303 (47815-47660) | |
| 1238-1379, gnl|echTel1|scaffold_319492 (142398-142240) | |
| 1238-1379, gnl|fr1|chrUn (296221913-296221747) | |
| 1238-1379, gnl|galGal2|chrUn (134072318-134072158) | |
| 1238-1379, gnl|hg17|chr11 (3697214-3697374) | |
| 1238-1379, gnl|Hg17|chr11 (3697358-3697217) | |
| 1238-1379, gnl|loxAfr1|scaffold_37992 (21322-21162) | |
| 1238-1379, gnl|mm7|chr7 (98198413-98198573) | |
| 1238-1379, gnl|Mm7|chr7 (98198557-98198416) | |
| 1238-1379, gnl|monDom2|scaffold_74 (6852766-6852924) | |
| 1238-1379, gnl|oryCun1|scaffold_158490 (9216-9056) | |
| 1238-1379, gnl|panTro1|chr9 (3840023-3840183) | |
| 1238-1379, gnl|rheMac2|chr14 (69831467-69831307) | |
| 1238-1379, gnl|rn3|chr1 (159716221-159716382) | |
| 1238-1379, gnl|tetNig1|chr7 (9834096-9833930) | |
| 1555-1884, gnl|bosTau2|chr15 (32841317-32840980) | |
| 1555-1884, gnl|Hg17|chr11 (3690536-3690200) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 245-387, gnl|bosTau2|chr15 (32868653-32868511) | |
| 245-387, gnl|Hg17|chr11 (3722457-3722315) | |
| 245-387, gnl|Mm7|chr7 (98215604-98215462) | |
| 520-710, gnl|bosTau2|chr15 (32861844-32861654) | |
| 520-710, gnl|canFam2|chr21 (29302506-29302710) | |
| 520-710, gnl|danRer3|chr21 (38325259-38325458) | |
| 520-710, gnl|dasNov1|scaffold_113299 (3790-3586) | |
| 520-710, gnl|echTel1|scaffold_319492 (136466-136264) | |
| 520-710, gnl|fr1|chrUn (296220506-296220289) | |
| 520-710, gnl|galGal2|chrUn (134067981-134067777) | |
| 520-710, gnl|hg17|chr11 (3709194-3709398) | |
| 520-710, gnl|Hg17|chr11 (3709386-3709196) | |
| 520-710, gnl|mm7|chr7 (98206637-98206836) | |
| 520-710, gnl|Mm7|chr7 (98206829-98206639) | |
| 520-710, gnl|monDom2|scaffold_74 (6863745-6863949) | |
| 520-710, gnl|oryCun1|scaffold_210944 (804-1008) | |
| 520-710, gnl|panTro1|chr9 (3852077-3852281) | |
| 520-710, gnl|rheMac2|chr14 (69816792-69816588) | |
| 520-710, gnl|rn3|chr1 (159726483-159726687) | |
| 520-710, gnl|tetNig1|chr7 (9832711-9832494) | |
| 825-1126, gnl|bosTau2|chr15 (32852441-32852140) | |
| 825-1126, gnl|Hg17|chr11 (3701263-3700962) | |
| 825-1126, gnl|Mm7|chr7 (98200194-98199893) | |
| 1238-1379, gnl|bosTau2|chr15 (32848679-32848538) | |
| 1238-1379, gnl|canFam2|chr21 (29288190-29288350) | |
| 1238-1379, gnl|danRer3|chr21 (38321250-38321408) | |
| 1238-1379, gnl|dasNov1|scaffold_22303 (47815-47660) | |
| 1238-1379, gnl|echTel1|scaffold_319492 (142398-142240) | |
| 1238-1379, gnl|fr1|chrUn (296221913-296221747) | |
| 1238-1379, gnl|galGal2|chrUn (134072318-134072158) | |
| 1238-1379, gnl|hg17|chr11 (3697214-3697374) | |
| 1238-1379, gnl|Hg17|chr11 (3697358-3697217) | |
| 1238-1379, gnl|loxAfr1|scaffold_37992 (21322-21162) | |
| 1238-1379, gnl|mm7|chr7 (98198413-98198573) | |
| 1238-1379, gnl|Mm7|chr7 (98198557-98198416) | |
| 1238-1379, gnl|monDom2|scaffold_74 (6852766-6852924) | |
| 1238-1379, gnl|oryCun1|scaffold_158490 (9216-9056) | |
| 1238-1379, gnl|panTro1|chr9 (3840023-3840183) | |
| 1238-1379, gnl|rheMac2|chr14 (69831467-69831307) | |
| 1238-1379, gnl|rn3|chr1 (159716221-159716382) | |
| 1238-1379, gnl|tetNig1|chr7 (9834096-9833930) | |
| 1555-1884, gnl|bosTau2|chr15 (32841317-32840980) | |
| 1555-1884, gnl|Hg17|chr11 (3690536-3690200) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| tra (0.123092) |