Non-Coding RNA Search

Ss1.1-Pig4-TMW8050I22.5

Sequence:


               
               CTTTGTATAAATTTGTAACCAAGAAGTTGATTATTTTGAAAGGAACAACACATGTGGATA
TGTAATTCTGGTATTCTTGTTAAAAGATACCTGTCACATTACCTTTTAGCCACAGATCCC
AGTTTGTGTCCTGTAGCAGGTGAAAACATCTTACCCTAGTTGTGCTTTTTTATTTAAACA
ATCAAAATGGAGTAACAGTGCCACACACATTCTTGTCTTTTATTCTTAGAGCTGTAGATA
TGTATAGCATTGCCAGGAATGCATTGCCAAAAATATTTTTCTCTATTTTTAATGGATTAC
TTCACCTTGATGTCTATATTTAAAAACAGAAATGGACCATTTTCAAAAACTGTTTGATCT
GGGCCATAAGATTAAGTAATGTCTAACAAAACAATCTGATTCTGATTACTTTAATATAGT
GTCATCAAAACCTTTAGGGAACTTTGTGGTTGAAACTAGAAGACATCTTAATCACATTCA
GTATTCCTTACAGTTTAGGATACTTTAAGTTTTGCTGCTAGTAACTTTGTTGAAGAGCTT
TGTTTTTCAATAAACTCTTTAAAAAAAAAAAAACGAACTTAACCATTTGAGTTTTTACTA
TGGACATTGCCACTATTTTTATCACATTCTTCTTGGTGATATGAGAAGTATTTAAATGTT
TTATCTTTTGTTCATCTCTATCTTTTGGAGTATGTTCCAAGACTAAGGTATCATTGAAAA
ATAAGTCTTGGCTATGGGCTCTTGGATATATGGGTCAGTCACTTTCATATAACTTGCGTC
GTCAGCCAAGCAAATACTTTTCCATTTACTTTCATCTATGCGTATTTTACTACTGATATT
CTCTGCTGTGTGCCATTGTGTGTCCTGTTTCAATATTTGTTTAAATGACAGGTGACCATG
GTATTAACACAGTATTTGAGTACTTTTGATGCACATTTCTCCATCCATCACTAAACACTC
TAAAACAGAACTTTATTTAAAGTTTTTTTTTTTTTAAACTTGATTTCATCATATAGTCAT
TTGAGCTTGGGAGTTTCTTCTAAATGAAAATAAAATTAGAGTGTATAATTTAAATTTTGC
TGCCAGTGAGAGAACGAGTTATGCTGTTAATTAGTAACAATATTATTCTAGTAGACTGTT
CACTAAAAATTGTTACTGTGAATTGGATATTTTTGGTTTATTTTGGGTAATAATAAAAGT
GCCTACATCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGTATAAATTTGTAACCAAGAAGTTGATTATTTTGAAAGGAACAACACATGTGGATA
TGTAATTCTGGTATTCTTGTTAAAAGATACCTGTCACATTACCTTTTAGCCACAGATCCC
AGTTTGTGTCCTGTAGCAGGTGAAAACATCTTACCCTAGTTGTGCTTTTTTATTTAAACA
ATCAAAATGGAGTAACAGTGCCACACACATTCTTGTCTTTTATTCTTAGAGCTGTAGATA
TGTATAGCATTGCCAGGAATGCATTGCCAAAAATATTTTTCTCTATTTTTAATGGATTAC
TTCACCTTGATGTCTATATTTAAAAACAGAAATGGACCATTTTCAAAAACTGTTTGATCT
GGGCCATAAGATTAAGTAATGTCTAACAAAACAATCTGATTCTGATTACTTTAATATAGT
GTCATCAAAACCTTTAGGGAACTTTGTGGTTGAAACTAGAAGACATCTTAATCACATTCA
GTATTCCTTACAGTTTAGGATACTTTAAGTTTTGCTGCTAGTAACTTTGTTGAAGAGCTT
TGTTTTTCAATAAACTCTTTAAAAAAAAAAAAACGAACTTAACCATTTGAGTTTTTACTA
TGGACATTGCCACTATTTTTATCACATTCTTCTTGGTGATATGAGAAGTATTTAAATGTT
TTATCTTTTGTTCATCTCTATCTTTTGGAGTATGTTCCAAGACTAAGGTATCATTGAAAA
ATAAGTCTTGGCTATGGGCTCTTGGATATATGGGTCAGTCACTTTCATATAACTTGCGTC
GTCAGCCAAGCAAATACTTTTCCATTTACTTTCATCTATGCGTATTTTACTACTGATATT
CTCTGCTGTGTGCCATTGTGTGTCCTGTTTCAATATTTGTTTAAATGACAGGTGACCATG
GTATTAACACAGTATTTGAGTACTTTTGATGCACATTTCTCCATCCATCACTAAACACTC
TAAAACAGAACTTTATTTAAAGTTTTTTTTTTTTTAAACTTGATTTCATCATATAGTCAT
TTGAGCTTGGGAGTTTCTTCTAAATGAAAATAAAATTAGAGTGTATAATTTAAATTTTGC
TGCCAGTGAGAGAACGAGTTATGCTGTTAATTAGTAACAATATTATTCTAGTAGACTGTT
CACTAAAAATTGTTACTGTGAATTGGATATTTTTGGTTTATTTTGGGTAATAATAAAAGT
GCCTACATCAGA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1205, gnl|bosTau2|chr1 (42987506-42986305)
               

               
               1-1205, gnl|Hg17|chr3 (198049110-198050919)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1205, gnl|bosTau2|chr1 (42987506-42986305)
               

               
               1-1205, gnl|Hg17|chr3 (198049110-198050919)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               kid (0.389206)
               

               
               fco (0.314416)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               fco (0.314416)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)

	1-1205, gnl\|bosTau2\|chr1 (42987506-42986305)
	1-1205, gnl\|Hg17\|chr3 (198049110-198050919)

	kid (0.389206)
	fco (0.314416)
	mga (0.160205)
	liv (0.146284)
	spl (0.143184)
	nmm (0.132802)