Non-Coding RNA Search

Ss1.1-Pig4-TMW8050I24.3

Sequence:


               
               AGATGTCAAGGTTTTTATATCACCAGTTGCTGTTGGCCTGTCCTACGTTGTTTTTTAATA
TTTCCTTTATTCTACCCCAAAGATTTCAACATTTAGTTCTCTCACTGGGCAAGGCCATAC
CTCATTTATAAAATACATCAACATATTGTGATTCTCTGTAATTGACTATAAATCAGTTTA
AAAATGTCCAAACATACATTGTTGTGTCTTTATGCTGTACTGTGTGTTTTAAGTAACTGG
CAGAAAAAGAATTGGGAATTAAATTTCCAGTCAGACAATGTGAGAAAAAAATAAGAAAAA
TCTTTTGTTTTTAATATGCGGTACCACGTGAAATGACTTAATGTTAGGAATAAAGTCCAC
TGTTGAAGTCGAATGTCACTAAGCTTATTGTGTTATAAGGAGCCGGTATGATTAGAAAAA
CCTACCAGAAGCCAGATACAGTGTGGTATGTGCCACATTTCATGCACATTTTGACTTTGT
GTTCTTTCACAATTGTGCTTGTAAAAATGTATAAAATTTCTGAGTTTTACAGTTTTTATG
TACTTGTTTTTTCTTGCTGGTAAATAGCTTTTTTTTTAAACCAATGTGAAAGAGACCATG
TTTATATTTTGTTAGTGACCAATGACTTTGTTTATATGGAAATTTGTATATTGTTGGCAC
ACATCTCTGTTTAGATTTATCGTGCATGAAGGCCTGCAATAATTAGCACAACAAAAACTG
CTTTTTCTTACATGTTCATTTTTTGAAAGATTGTGGTGCAAAGGCTTACTCTGAGTAACC
TTCTGGACTATGGAATGAATATAAATGAATGGCACTTTGAGTGTTAATAAAGCTGATATT
TATTTCCACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGTCAAGGTTTTTATATCACCAGTTGCTGTTGGCCTGTCCTACGTTGTTTTTTAATA
TTTCCTTTATTCTACCCCAAAGATTTCAACATTTAGTTCTCTCACTGGGCAAGGCCATAC
CTCATTTATAAAATACATCAACATATTGTGATTCTCTGTAATTGACTATAAATCAGTTTA
AAAATGTCCAAACATACATTGTTGTGTCTTTATGCTGTACTGTGTGTTTTAAGTAACTGG
CAGAAAAAGAATTGGGAATTAAATTTCCAGTCAGACAATGTGAGAAAAAAATAAGAAAAA
TCTTTTGTTTTTAATATGCGGTACCACGTGAAATGACTTAATGTTAGGAATAAAGTCCAC
TGTTGAAGTCGAATGTCACTAAGCTTATTGTGTTATAAGGAGCCGGTATGATTAGAAAAA
CCTACCAGAAGCCAGATACAGTGTGGTATGTGCCACATTTCATGCACATTTTGACTTTGT
GTTCTTTCACAATTGTGCTTGTAAAAATGTATAAAATTTCTGAGTTTTACAGTTTTTATG
TACTTGTTTTTTCTTGCTGGTAAATAGCTTTTTTTTTAAACCAATGTGAAAGAGACCATG
TTTATATTTTGTTAGTGACCAATGACTTTGTTTATATGGAAATTTGTATATTGTTGGCAC
ACATCTCTGTTTAGATTTATCGTGCATGAAGGCCTGCAATAATTAGCACAACAAAAACTG
CTTTTTCTTACATGTTCATTTTTTGAAAGATTGTGGTGCAAAGGCTTACTCTGAGTAACC
TTCTGGACTATGGAATGAATATAAATGAATGGCACTTTGAGTGTTAATAAAGCTGATATT
TATTTCCACTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               703-852, - strand, RNAz p=0.521117

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               703-852, - strand, RNAz p=0.521117

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr2 (1256637-1257485)
               

               
               1-852, gnl|Hg17|chr2 (127773335-127772476)
               

               
               1-852, gnl|Mm7|chr18 (32628024-32628827)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr2 (1256637-1257485)
               

               
               1-852, gnl|Hg17|chr2 (127773335-127772476)
               

               
               1-852, gnl|Mm7|chr18 (32628024-32628827)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               lin (0.873617)
               

               
               mgm (0.360685)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.873617)
               

               
               mgm (0.360685)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

	1-852, gnl\|bosTau2\|chr2 (1256637-1257485)
	1-852, gnl\|Hg17\|chr2 (127773335-127772476)
	1-852, gnl\|Mm7\|chr18 (32628024-32628827)

	lin (0.873617)
	mgm (0.360685)
	ret (0.257467)
	tra (0.246184)
	sag (0.182715)
	rec (0.17307)
	fat (0.147427)
	ste (0.135208)
	pgl (0.118483)
	nbm (0.0993246)