Non-Coding RNA Search

Ss1.1-Pig4-TMW8050I24.5

Sequence:


               
               CTTTTTATTCAAACATCACTGTAAATAAAAGTAAACTTGGATAAATCTGAGAATAAACTT
TTAATGTTGCAAACTATGATTATCAATTTGTAAATTTACCCTTTGACCTAATGTACATTT
TTAATGTAGCCATTAAATTCTCTATATTTAATCTGTTAGTTTCTCTCTGTAAACGTTTTT
AATCTCATTTGAATGCTGGGCAGTTTATAATTATGTACAAAGGTGTTCTTTTCCTATCCA
GGTTGACTTTTTTGCACATTTTTGGAAATGTTTATTTGTACACTGATTTACTACTCTGAC
AGTCATCGTTGATGGGTGTGTGAGCATCGTGAATGCGGATGCGTGCATTGAACTACTGTC
TGTCTCTGTGTTTAAACTTCTTTTAAGATGTAACCGTCAGTAACTGCACTGCTATTACTG
ACTTAAATGGACACTCTTGCTTTTACAAAGTATACTTATCTATGGTTCTATCTTTGTTGA
AGAACTCAGGAGTTCAACATCACTTTCTGATTTTGTATGCTTTCTAAAATCCATGACTAA
GTTGAAAGTATGCTTGTACTCTGTGTGTCAGGGGATGTGTGTGTGTGGAAATGTCTTTTT
CTGTCTGTAGGCACATGTATATATCCCAGTAATTTCTTATTTTCATTTCTACATTTTTAT
GAACTTGTTTTATAAAGGTACTGTTTAGTTAGAATAATTAAATATATATAAAGCTTTCTG
AGAGATTATTTACTATATGAATATATTTTCAGCTGGCTGATCAAAAGTATTTTTTTAATT
TTGTTTTTAACCATTCAAAATGTATTTGTATTTCCACAATTGGATGCAGATTTACTTAAA
TATCTACCAATTAAAACACTCTTGCAAAGAAGAACATTGAATTCTCTTTGAGAATTCTGC
AAAATGCAAATTAAGAGGGGAAAAAAAGGTTTTAAGCAGAAGCAAAAACACTGTCCACTA
AAACAGCCTTTGAATTCTCAGAGCTATGAAAAAATGAGAAATTAAATTATCTTGAAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTATTCAAACATCACTGTAAATAAAAGTAAACTTGGATAAATCTGAGAATAAACTT
TTAATGTTGCAAACTATGATTATCAATTTGTAAATTTACCCTTTGACCTAATGTACATTT
TTAATGTAGCCATTAAATTCTCTATATTTAATCTGTTAGTTTCTCTCTGTAAACGTTTTT
AATCTCATTTGAATGCTGGGCAGTTTATAATTATGTACAAAGGTGTTCTTTTCCTATCCA
GGTTGACTTTTTTGCACATTTTTGGAAATGTTTATTTGTACACTGATTTACTACTCTGAC
AGTCATCGTTGATGGGTGTGTGAGCATCGTGAATGCGGATGCGTGCATTGAACTACTGTC
TGTCTCTGTGTTTAAACTTCTTTTAAGATGTAACCGTCAGTAACTGCACTGCTATTACTG
ACTTAAATGGACACTCTTGCTTTTACAAAGTATACTTATCTATGGTTCTATCTTTGTTGA
AGAACTCAGGAGTTCAACATCACTTTCTGATTTTGTATGCTTTCTAAAATCCATGACTAA
GTTGAAAGTATGCTTGTACTCTGTGTGTCAGGGGATGTGTGTGTGTGGAAATGTCTTTTT
CTGTCTGTAGGCACATGTATATATCCCAGTAATTTCTTATTTTCATTTCTACATTTTTAT
GAACTTGTTTTATAAAGGTACTGTTTAGTTAGAATAATTAAATATATATAAAGCTTTCTG
AGAGATTATTTACTATATGAATATATTTTCAGCTGGCTGATCAAAAGTATTTTTTTAATT
TTGTTTTTAACCATTCAAAATGTATTTGTATTTCCACAATTGGATGCAGATTTACTTAAA
TATCTACCAATTAAAACACTCTTGCAAAGAAGAACATTGAATTCTCTTTGAGAATTCTGC
AAAATGCAAATTAAGAGGGGAAAAAAAGGTTTTAAGCAGAAGCAAAAACACTGTCCACTA
AAACAGCCTTTGAATTCTCAGAGCTATGAAAAAATGAGAAATTAAATTATCTTGAAGAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               538-649, - strand, RNAz p=0.989416
               

               
               802-920, - strand, RNAz p=0.854638

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               538-649, - strand, RNAz p=0.989416
               

               
               802-920, - strand, RNAz p=0.854638

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1020, gnl|bosTau2|chr2 (1255632-1256639)
               

               
               1-1020, gnl|Hg17|chr2 (127774348-127773333)
               

               
               1-1020, gnl|Mm7|chr18 (32627105-32628026)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1020, gnl|bosTau2|chr2 (1255632-1256639)
               

               
               1-1020, gnl|Hg17|chr2 (127774348-127773333)
               

               
               1-1020, gnl|Mm7|chr18 (32627105-32628026)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cty (0.31224)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	538-649, - strand, RNAz p=0.989416
	802-920, - strand, RNAz p=0.854638

	1-1020, gnl\|bosTau2\|chr2 (1255632-1256639)
	1-1020, gnl\|Hg17\|chr2 (127774348-127773333)
	1-1020, gnl\|Mm7\|chr18 (32627105-32628026)

	cty (0.31224)
	fat (0.147427)
	liv (0.146284)
	pla (0.133672)
	kid (0.129735)
	tra (0.123092)
	ebs (0.118301)
	eje (0.0988338)