Non-Coding RNA Search

Ss1.1-Pig4-TMW8050J02.3

Sequence:


               
               GCTTTGAACAGAACCACACAGGGAGACATCAGGAAGGCCAGCTGAGAGATGTCAGCAATA
ACCCCCTTGGTAGTGGTGGAGCCAGTTAATAGAGCACCTCAATTTGTTTGTCTTTTCAGA
TGTCGAGATTAAGTAAGTTAGTATAGTGACTAGCACACAGAAGCCCCTCCATAAATGGTA
GCTGTTTTTATTATTGACAGATGCCAATGCTGGGGGGAGGGGGAGAGGTGCTTACATCTA
ATTAGGAAGACCAATAATTTCAGCACCAAGTGGTAAGTACTACGTTCCAGACAAGTGAGA
GTATAGAGGAGAGACACTTAAGCCCAAGTCGGGGGTAGGAAAGGCCAGGAAGTGCGTTTC
AGCAGAAGGGGCACTGCTTTAGCAAAGAAAGACACAGGGAAATGGTATTTAAAGTAGAAC
GTTTTCACAGTGTCCACACTGCCCCAACTCCCCAGTGCGGGTGACGGAGCACAGCTTTAT
CCTTTAGTTTAGCAAAATAATCAGTGATCTAAAGAAATGGTGATGATTTAATTCCTGAGT
GTGTTAACTGAATCACCCAGTAGGCTGGGGGGTCCTTATGTTCCAACTCAAGAACTCAAG
TTCACTGATCATTGTATAAATCCCACAGAGCTTTTGCTTCTGGTCAGCAATTGGATATAA
AAACTCAAGCTGCTAAGAACTTTAGAACTCACTGTGGAAAAGGGAGTTCTTAATCTGGAC
CTCAAATATTGGGGAGGTAATGAATCTCTTGAAGATATTTGCAGAACTAGGTGTGTATGT
GTGAATATGGGGAATGCATAGCTTGTATCGGATTCTCAAAGAGGTTTATGATCCAAAGAA
GATTATAATACTCCTTCTGAGATTATGATTAGAGGCTAAAAATCAATCCAGAAGAAACGG
GCATGTTTTTTGCTTGCCATTTCATCTATCATTAAAATATCTGGTAAAGTGATATTTTAA
ATCACATGAAATCAGTTAAAACACTGCATTTAAAAATGGTTCCTTTATAATAAGAACATT
GTCATTTTATTCAAATATGAACTGTCAATATGAAATTTGGACTGGGTCCAAATTTAGAAT
TCCACCTGTGCCAAGCTCTGATGAAGAATGAGCCATAGTATAATAAAAAACGCTTAGAGG
CCAAATTTGCTGTATTGATCAGGCCAGGATCATACCTGGTATCCTTCCTTTTGAATGTTT
TCTGCCTGACTTTGTTATTGTTTTCATTGATTACTGACTCCCTACATTCCTCTTACGGTA
AGGTGCCAACTGCCCAAAGTGACAGTTAAGCCCTAAAGGCTTCTTCAAAGCCAGACAGAT
AGGAATGTTTACTGAAATTTTACTTTAAAAAGAAGATTAATGGAAGTTAACTGCTCTGAC
CAGCTTCCAGAGACTCTGCGGATAGGACCTCATCTTCTAGTCATGCGTGGATGGTAAGAA
CCGGTTTTGGTCTGACAATGGGGAATTATGTGCATGGGCTATAATAATACCCATTTCTTG
AGCACAGACTATGGTCCAAACACCTTGTTAAGTGCCTTATGTATATTATCCCACGGGATC
CTTACAATACCTAGTGAGATAGGAACTTTATTTTATAGATTCCAAAACTGGGCTTTGAGA
TATTTGGTAACTAACTTGCCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTGAACAGAACCACACAGGGAGACATCAGGAAGGCCAGCTGAGAGATGTCAGCAATA
ACCCCCTTGGTAGTGGTGGAGCCAGTTAATAGAGCACCTCAATTTGTTTGTCTTTTCAGA
TGTCGAGATTAAGTAAGTTAGTATAGTGACTAGCACACAGAAGCCCCTCCATAAATGGTA
GCTGTTTTTATTATTGACAGATGCCAATGCTGGGGGGAGGGGGAGAGGTGCTTACATCTA
ATTAGGAAGACCAATAATTTCAGCACCAAGTGGTAAGTACTACGTTCCAGACAAGTGAGA
GTATAGAGGAGAGACACTTAAGCCCAAGTCGGGGGTAGGAAAGGCCAGGAAGTGCGTTTC
AGCAGAAGGGGCACTGCTTTAGCAAAGAAAGACACAGGGAAATGGTATTTAAAGTAGAAC
GTTTTCACAGTGTCCACACTGCCCCAACTCCCCAGTGCGGGTGACGGAGCACAGCTTTAT
CCTTTAGTTTAGCAAAATAATCAGTGATCTAAAGAAATGGTGATGATTTAATTCCTGAGT
GTGTTAACTGAATCACCCAGTAGGCTGGGGGGTCCTTATGTTCCAACTCAAGAACTCAAG
TTCACTGATCATTGTATAAATCCCACAGAGCTTTTGCTTCTGGTCAGCAATTGGATATAA
AAACTCAAGCTGCTAAGAACTTTAGAACTCACTGTGGAAAAGGGAGTTCTTAATCTGGAC
CTCAAATATTGGGGAGGTAATGAATCTCTTGAAGATATTTGCAGAACTAGGTGTGTATGT
GTGAATATGGGGAATGCATAGCTTGTATCGGATTCTCAAAGAGGTTTATGATCCAAAGAA
GATTATAATACTCCTTCTGAGATTATGATTAGAGGCTAAAAATCAATCCAGAAGAAACGG
GCATGTTTTTTGCTTGCCATTTCATCTATCATTAAAATATCTGGTAAAGTGATATTTTAA
ATCACATGAAATCAGTTAAAACACTGCATTTAAAAATGGTTCCTTTATAATAAGAACATT
GTCATTTTATTCAAATATGAACTGTCAATATGAAATTTGGACTGGGTCCAAATTTAGAAT
TCCACCTGTGCCAAGCTCTGATGAAGAATGAGCCATAGTATAATAAAAAACGCTTAGAGG
CCAAATTTGCTGTATTGATCAGGCCAGGATCATACCTGGTATCCTTCCTTTTGAATGTTT
TCTGCCTGACTTTGTTATTGTTTTCATTGATTACTGACTCCCTACATTCCTCTTACGGTA
AGGTGCCAACTGCCCAAAGTGACAGTTAAGCCCTAAAGGCTTCTTCAAAGCCAGACAGAT
AGGAATGTTTACTGAAATTTTACTTTAAAAAGAAGATTAATGGAAGTTAACTGCTCTGAC
CAGCTTCCAGAGACTCTGCGGATAGGACCTCATCTTCTAGTCATGCGTGGATGGTAAGAA
CCGGTTTTGGTCTGACAATGGGGAATTATGTGCATGGGCTATAATAATACCCATTTCTTG
AGCACAGACTATGGTCCAAACACCTTGTTAAGTGCCTTATGTATATTATCCCACGGGATC
CTTACAATACCTAGTGAGATAGGAACTTTATTTTATAGATTCCAAAACTGGGCTTTGAGA
TATTTGGTAACTAACTTGCCCAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               875-980, - strand, RNAz p=0.781608

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               875-980, - strand, RNAz p=0.781608

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               11-1093, gnl|bosTau2|chr5 (64708411-64707352)
               

               
               11-1093, gnl|Hg17|chr12 (103917486-103918919)
               


               
               1132-1641, gnl|bosTau2|chr5 (64707347-64706813)
               

               
               1132-1641, gnl|Hg17|chr12 (103918960-103919738)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1093, gnl|bosTau2|chr5 (64708411-64707352)
               

               
               11-1093, gnl|Hg17|chr12 (103917486-103918919)
               


               
               1132-1641, gnl|bosTau2|chr5 (64707347-64706813)
               

               
               1132-1641, gnl|Hg17|chr12 (103918960-103919738)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ldo (0.0970026)

	11-1093, gnl\|bosTau2\|chr5 (64708411-64707352)
	11-1093, gnl\|Hg17\|chr12 (103917486-103918919)

	1132-1641, gnl\|bosTau2\|chr5 (64707347-64706813)
	1132-1641, gnl\|Hg17\|chr12 (103918960-103919738)