Non-Coding RNA Search

Ss1.1-Pig4-TMW8050J07.5

Sequence:


               
               TGGCGGATCGCCTGACACAGCTGCAGGACGCCGTGAACTCGCTTGCAGATCAGTTTTGTA
ATGCCATTGGAGTGTTGCAGCAGTGTGGTCCTCCTGCCTCTTTCAGTAATATTCAGACAA
CCATTAACAAAGATCAGCCAGCTAATCCTACAGAAGAATATGCCCAGCTATTTGCAGCGC
TGATTGCACGAACGGCAAAAGACATTGATGTTTTGATAGATTCCTTACCCAGTGAAGAAT
CTACAGCTGCTTTACAGGCTGCCAGCTTGTATAAGCTAGAAGAAGAAAATCATGAAGCTG
CTACATGTCTGGAGGATGTTGTTTATCGAGGGGATATGCTTCTGGAAAAGATACAGAGTG
CCCTTGCTGATATTGCGCAGTCACAGCTGAAGACAAGAAGTGGTACCCACAGCCAGTCTC
TTCCAGACTCATAGCACCAGTGTACATATCATGTGGCCAAGAAGAGAACTATTTCAGTGC
CGTTAAGAATTCTACATCAGATTTAGATGTAAGCCTTATCGATAGTTAGAGAAACATTAA
GCACTATGACACGTTATCTTTTTAGCTATTTTTAATAGTCTTCTATTTTCATTTTTAATA
AATAAGCTTGTAAAATTGTGATTGAACCAGCTTTAAACTGTCATTATGCTATTATTTTGT
ATTTTGAGTGAAATTATTGAGGCAGATATTGCACTTACAGTCAGAATATAATTAAACAGA
TGTACTATAGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGGATCGCCTGACACAGCTGCAGGACGCCGTGAACTCGCTTGCAGATCAGTTTTGTA
ATGCCATTGGAGTGTTGCAGCAGTGTGGTCCTCCTGCCTCTTTCAGTAATATTCAGACAA
CCATTAACAAAGATCAGCCAGCTAATCCTACAGAAGAATATGCCCAGCTATTTGCAGCGC
TGATTGCACGAACGGCAAAAGACATTGATGTTTTGATAGATTCCTTACCCAGTGAAGAAT
CTACAGCTGCTTTACAGGCTGCCAGCTTGTATAAGCTAGAAGAAGAAAATCATGAAGCTG
CTACATGTCTGGAGGATGTTGTTTATCGAGGGGATATGCTTCTGGAAAAGATACAGAGTG
CCCTTGCTGATATTGCGCAGTCACAGCTGAAGACAAGAAGTGGTACCCACAGCCAGTCTC
TTCCAGACTCATAGCACCAGTGTACATATCATGTGGCCAAGAAGAGAACTATTTCAGTGC
CGTTAAGAATTCTACATCAGATTTAGATGTAAGCCTTATCGATAGTTAGAGAAACATTAA
GCACTATGACACGTTATCTTTTTAGCTATTTTTAATAGTCTTCTATTTTCATTTTTAATA
AATAAGCTTGTAAAATTGTGATTGAACCAGCTTTAAACTGTCATTATGCTATTATTTTGT
ATTTTGAGTGAAATTATTGAGGCAGATATTGCACTTACAGTCAGAATATAATTAAACAGA
TGTACTATAGAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14249987|gb|AAH08380.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14249987|gb|AAH08380.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-262, + strand, RNAz p=0.618933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-262, + strand, RNAz p=0.618933

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               157-262, gnl|bosTau2|chr9 (833355-833248)
               

               
               157-262, gnl|Hg17|chr12 (27071547-27071650)
               

               
               157-262, gnl|Mm7|chr6 (146727469-146727572)
               


               
               515-736, gnl|bosTau2|chr4 (63966367-63966594)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-262, gnl|bosTau2|chr9 (833355-833248)
               

               
               157-262, gnl|Hg17|chr12 (27071547-27071650)
               

               
               157-262, gnl|Mm7|chr6 (146727469-146727572)
               


               
               515-736, gnl|bosTau2|chr4 (63966367-63966594)

Expressed library(ies): 45 entry(ies)

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Expressed library(ies): 45 entry(ies)

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               cbe (1.43541)
               

               
               thg (1.14112)
               

               
               mgp (0.922722)
               

               
               fty (0.703359)
               

               
               pgl (0.592417)
               

               
               ret (0.514933)
               

               
               ece (0.45861)
               

               
               lin (0.436808)
               

               
               pty (0.428143)
               

               
               hea (0.408998)
               

               
               kid (0.389206)
               

               
               ldo (0.38801)
               

               
               bla (0.373042)
               

               
               cmu (0.372787)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.43541)
               

               
               thg (1.14112)
               

               
               mgp (0.922722)
               

               
               fty (0.703359)
               

               
               pgl (0.592417)
               

               
               ret (0.514933)
               

               
               ece (0.45861)
               

               
               lin (0.436808)
               

               
               pty (0.428143)
               

               
               hea (0.408998)
               

               
               kid (0.389206)
               

               
               ldo (0.38801)
               

               
               bla (0.373042)
               

               
               cmu (0.372787)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	157-262, gnl\|bosTau2\|chr9 (833355-833248)
	157-262, gnl\|Hg17\|chr12 (27071547-27071650)
	157-262, gnl\|Mm7\|chr6 (146727469-146727572)

	515-736, gnl\|bosTau2\|chr4 (63966367-63966594)

	cbe (1.43541)
	thg (1.14112)
	mgp (0.922722)
	fty (0.703359)
	pgl (0.592417)
	ret (0.514933)
	ece (0.45861)
	lin (0.436808)
	pty (0.428143)
	hea (0.408998)
	kid (0.389206)
	ldo (0.38801)
	bla (0.373042)
	cmu (0.372787)
	mga (0.32041)
	cte (0.29274)
	csk (0.281492)
	ste (0.270416)
	lyg (0.266205)
	ebs (0.236602)
	jca (0.22792)
	tes (0.207814)
	aor (0.195274)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	mgm (0.180343)
	sto (0.179824)
	ill (0.175593)
	sin (0.174948)
	mcp (0.170648)
	cut (0.169924)
	fco (0.157208)
	tbr (0.154178)
	bfe (0.149858)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	med (0.116252)
	spc (0.113366)
	nbm (0.0993246)
	jej (0.0989218)