Non-Coding RNA Search

Ss1.1-Pig4-TMW8050J15.3

Sequence:


               
               TATGTTCGTTTTCCATACCATAGTGTTGAATTTGTCAAAATGGCATTTCAAATGGAAGCA
CACAGCTGTTTGTCTGTCTGCTAAGTGTACCATGTATTGTATGAATTCAGCTCTAGGGAG
AGCAAAGGTTTTAGAAAAATTAGTAGTTTCCAAGAATGGAGCTTCATACACTCTACCGTC
CTCATGACATGAACCTTGTTAAGGTTCTGACTGAAGGAATAAACAGTGTTGAGGTGCTTG
CAGAGTCCCTGAAGGAAGGGCTGACCACCAGGGATGGCAGTGGTTTCCAGAAGAGACTGG
GAGAAAGACCCCACTTCCCTTTTCACTGGGAGTTACACTTTACTGACAGTGTAACTTGGA
GCGGGTCAGACACCACTGTCATAGCAGTGGGTATAAAATGATTCCTCTTCCCCCACAGCC
CCCTAGGAGTACATTTGAATACCTGAAAGCATGTTTTTTTTTTTTCCTAAAATTACCATA
AATGATTAAAAGAAGTAATTCAGTTCAAGAGTTTCAAGGTAACATTTTTTTTTTTCTGAA
TAAGATGTCAGTACTGTGGTATCAGATTTCATGGAAATGGAAGTGTTTTGGTAAAGCTAC
ACTATGGAAGCTTTCTCTTGGTAACAGCAAATGGAGAACACTTGTGTGCAAAGTTATTTA
AATATATGTTCCATTAATAATTATTTTAATAATTTTTTTAAGTATTTGATCTTATGGGGG
TGTTGTGTGATGAGTAGTTAATCAATTTAAATATAGCTATGTGTCTAGTCTGGTGGGATA
ACCTTTTTAATTTAAATTTATGTTTTCCCTGTCTTGATATAGTGAGGAAAGATCTTTATC
AGAACTTTCGTAATAATCTGACTGAATTCAAGCAAATTGGATTTCATTAACTCAGGTCGT
TATTGATATTTCATAGTATCTGGAGGGCACCAGTTTCTCTTTCATTATTTGGTCTTGATC
TCTTGATCTAATAGAGAAATGACTCTTCAGGTGGCAGTGACTCAGTGCACTGAGTGGGGA
TCTCCCCCCTCAGGGTGTCATTGAATGCTGACAATTTACGAAAACAAACCACAAAATTAA
GAGCAGCTGCATGCTCCTGTCCAGAAGTTTAAACTCCACGGTAATGACTTTTGCAAACAA
GAGGTCATCTCCTGAGTCTCTTCCAGTTACCTGGCAACACAGAGGCCAAGTGTGGCAGAT
TTAGGTAGGACACAAGTTAGGGTGTGAGCTCAAGCCATTATCCCATCTGTACTATAGGCA
TTGCCTTACTTGTCAACATTTAGATTTCCAGAGAAATGGGCATAATTCCTCTTCAAAATT
AAAAAAAATAGCAAAATACATTAACCTCAAGTCAACAATTTGAGAAGCAATTATCAAGTA
CCATGTTCTCCAACCAGTTGTTTTGGTGTAATAATAAGGAAAACATGGAAAAACAAAAAT
ATTAGAATTTTTAAAGAAACTATGTACCTTAAAAACAACAAAACAACACCTTTATAACTA
TTCTGTTTTACTGTAATCCTGTTCTATTAAATGCGATGTGGCTCCAGGTGCTGCGCCTTG
CTTGGGAACAAGCCTGGGGCACTAAATGTCTGAAGAGCCCTCTGAACCTGAAATAACTGA
GAATGAATTTCCTGGTACTGTAAAAAAAAAAAAAATAAGGTCTGCTCAACACAATAAACT
TTTCCTTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTTCGTTTTCCATACCATAGTGTTGAATTTGTCAAAATGGCATTTCAAATGGAAGCA
CACAGCTGTTTGTCTGTCTGCTAAGTGTACCATGTATTGTATGAATTCAGCTCTAGGGAG
AGCAAAGGTTTTAGAAAAATTAGTAGTTTCCAAGAATGGAGCTTCATACACTCTACCGTC
CTCATGACATGAACCTTGTTAAGGTTCTGACTGAAGGAATAAACAGTGTTGAGGTGCTTG
CAGAGTCCCTGAAGGAAGGGCTGACCACCAGGGATGGCAGTGGTTTCCAGAAGAGACTGG
GAGAAAGACCCCACTTCCCTTTTCACTGGGAGTTACACTTTACTGACAGTGTAACTTGGA
GCGGGTCAGACACCACTGTCATAGCAGTGGGTATAAAATGATTCCTCTTCCCCCACAGCC
CCCTAGGAGTACATTTGAATACCTGAAAGCATGTTTTTTTTTTTTCCTAAAATTACCATA
AATGATTAAAAGAAGTAATTCAGTTCAAGAGTTTCAAGGTAACATTTTTTTTTTTCTGAA
TAAGATGTCAGTACTGTGGTATCAGATTTCATGGAAATGGAAGTGTTTTGGTAAAGCTAC
ACTATGGAAGCTTTCTCTTGGTAACAGCAAATGGAGAACACTTGTGTGCAAAGTTATTTA
AATATATGTTCCATTAATAATTATTTTAATAATTTTTTTAAGTATTTGATCTTATGGGGG
TGTTGTGTGATGAGTAGTTAATCAATTTAAATATAGCTATGTGTCTAGTCTGGTGGGATA
ACCTTTTTAATTTAAATTTATGTTTTCCCTGTCTTGATATAGTGAGGAAAGATCTTTATC
AGAACTTTCGTAATAATCTGACTGAATTCAAGCAAATTGGATTTCATTAACTCAGGTCGT
TATTGATATTTCATAGTATCTGGAGGGCACCAGTTTCTCTTTCATTATTTGGTCTTGATC
TCTTGATCTAATAGAGAAATGACTCTTCAGGTGGCAGTGACTCAGTGCACTGAGTGGGGA
TCTCCCCCCTCAGGGTGTCATTGAATGCTGACAATTTACGAAAACAAACCACAAAATTAA
GAGCAGCTGCATGCTCCTGTCCAGAAGTTTAAACTCCACGGTAATGACTTTTGCAAACAA
GAGGTCATCTCCTGAGTCTCTTCCAGTTACCTGGCAACACAGAGGCCAAGTGTGGCAGAT
TTAGGTAGGACACAAGTTAGGGTGTGAGCTCAAGCCATTATCCCATCTGTACTATAGGCA
TTGCCTTACTTGTCAACATTTAGATTTCCAGAGAAATGGGCATAATTCCTCTTCAAAATT
AAAAAAAATAGCAAAATACATTAACCTCAAGTCAACAATTTGAGAAGCAATTATCAAGTA
CCATGTTCTCCAACCAGTTGTTTTGGTGTAATAATAAGGAAAACATGGAAAAACAAAAAT
ATTAGAATTTTTAAAGAAACTATGTACCTTAAAAACAACAAAACAACACCTTTATAACTA
TTCTGTTTTACTGTAATCCTGTTCTATTAAATGCGATGTGGCTCCAGGTGCTGCGCCTTG
CTTGGGAACAAGCCTGGGGCACTAAATGTCTGAAGAGCCCTCTGAACCTGAAATAACTGA
GAATGAATTTCCTGGTACTGTAAAAAAAAAAAAAATAAGGTCTGCTCAACACAATAAACT
TTTCCTTTTCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               171-352, - strand, RNAz p=0.997499

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-352, - strand, RNAz p=0.997499

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               90-719, gnl|bosTau2|chr2 (1893840-1894463)
               

               
               90-719, gnl|Hg17|chr2 (128666629-128667902)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-719, gnl|bosTau2|chr2 (1893840-1894463)
               

               
               90-719, gnl|Hg17|chr2 (128666629-128667902)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

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               lyg (0.665513)
               

               
               elu (0.385356)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.665513)
               

               
               elu (0.385356)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	90-719, gnl\|bosTau2\|chr2 (1893840-1894463)
	90-719, gnl\|Hg17\|chr2 (128666629-128667902)

	lyg (0.665513)
	elu (0.385356)
	csk (0.281492)
	fce (0.271592)
	eru (0.240096)
	cbe (0.239234)
	cty (0.20816)
	hea (0.204499)
	aor (0.195274)
	nlu (0.191681)
	cmu (0.186393)
	sto (0.179824)
	sin (0.174948)
	nje (0.16592)
	mga (0.160205)
	bfe (0.149858)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	cst (0.140036)
	nca (0.136874)
	ssp (0.13552)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	pgl (0.118483)
	med (0.116252)
	nbm (0.0993246)