Ss1.1-Pig4-TMW8050J16.5
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GGGGCGAGACGGTCATCCCGGAAGGTTGAGCCCAGTTTTCATCCATCTGGAAGCTGTCAC
GATGACCCTGACAAAAGGTTCCTTCACCTACTCCAGTGGGGAGGAGTATCGGGGCGAGTG
GAAGGAGGGCCGCAGACATGGTTTGGGTCAACTGATGTTTGCTGATGGTGGCACCTACCT
GGGCCATTTTGAAAATGGGCTCTTTAATGGTTTGGGGGTACTGACCTTCTCAGACGGCTC
GAGGTATGAGGGCGAGTTTGCCCAGGGCAAGTTCAACGGTGTCGGAGTCTTCATTCGACA
CGACAACATGACCTTCGAAGGGGAATTTAAAAACGGCCGCGTGGACGGTTTGGGCCTGCT
GACTTTCCCCGACGGTTCTCATGGAATACCCCGAAACGAAGGTCTGTTTGAGAATAACAA
GCTCTTGCGGCGTGAAAAGTGCCCCGCAGTGGTTCAGCGGGCCCAGAGCGCCTCCAAGTC
AGCCAGGAGCCTCGCGGCCTGAGGGCGCCACGCCCAGCTGACCAGGAACCAGGAGGGCCC
TGCCACCCGCTCGAGGTGAACCAACAGACCGATGTGAAAGGAGATTTGAATGACCTGGGA
GCGGAAGCCCTGGGAGTGGCCCCATCACCTGCCAGGCAGGGCTTCGATCTCAGGCGGGAG
GCCTCTGCAGCTGCAGTTACCTGCTCTGTCCTTCCCCTCTCTTGCTCGTTGGGTCTCTCC
ATCCCTAACACTCTGGTCCCCCAGCACAGACCAGCTGCTGCCTTCCTCCCACTTCCTTTT
CTGCCGAGTGATGCAGAATCTCTCCCTTCTGCTTCTCATTGGGGCAGATGATCCCAGCCC
CAGATCAGGGCCAGGGCTTTGTGCCGCCCTGGAAAGAAAGAAGGGAAACGACAGGGGCAG
CTTAGACATACATCACTGTGGTCCTGTGAAAGTCAAGGCCACAGCTTTTCTGTCTCTTAC
TCCCTGGTTCGCTTCTGGTGGCCGTGGTGGCCCCAGGCTTCTCCCTTGTCTGACCAGACC
AGTACTCGTGTCCGCCTCCTGCTCCTGTGGGTTCCGTGAAGTGCTCCTTCCCTCACCCTT
GACTTTACCCGCTGTCTTCCTTACCTGAGTTCCAGCAGATCATTTGGGCCCCTTTTTCCT
TCCTTAGACCTGGGACAGGATCCCTCTAGTCAAAAAGAAACGGATGTAAACAGTCACTGT
ATGAGTTTGTCACTTACTTCGGGGCAAAGAGCAGACATCTCTGGACAGCGTCAGGCCCTA
TCACAGAGTGACCTGAATCCTTAGGAGTGGCTTGGGCCGACATGGATCCTTCCCACTGGA
CCAGTAGGTCAGGCCCACCTCAACCCCTTGGCGTTCAGGTAGAATTGGACCCATGCTGGA
CGGCAGTGAACTAAAGAGCGTTGGGTTCACTGGAACTCTCCCACCGTGAGCCTTGGCCAT
CGGGCCTCAGGATCAGATCTTGACCAATAGGATCCCTGCACAGTTCATCACAGGGGCCTC
CCATGACCCTGTGACCCAAACACACCCCCACCCCCACCCCCAGCCCCTGATCCTCACGCT
CAGTGTCCCCTCCACATAGATTGTGGTGGAAATTATAGCTGTGTGCCTCTGTTTATTCTC
TGACTTGTACTGTAGAAACAAGTGTTTATGAGGAATAAACAAATCACCAGAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGGGCGAGACGGTCATCCCGGAAGGTTGAGCCCAGTTTTCATCCATCTGGAAGCTGTCAC
GATGACCCTGACAAAAGGTTCCTTCACCTACTCCAGTGGGGAGGAGTATCGGGGCGAGTG
GAAGGAGGGCCGCAGACATGGTTTGGGTCAACTGATGTTTGCTGATGGTGGCACCTACCT
GGGCCATTTTGAAAATGGGCTCTTTAATGGTTTGGGGGTACTGACCTTCTCAGACGGCTC
GAGGTATGAGGGCGAGTTTGCCCAGGGCAAGTTCAACGGTGTCGGAGTCTTCATTCGACA
CGACAACATGACCTTCGAAGGGGAATTTAAAAACGGCCGCGTGGACGGTTTGGGCCTGCT
GACTTTCCCCGACGGTTCTCATGGAATACCCCGAAACGAAGGTCTGTTTGAGAATAACAA
GCTCTTGCGGCGTGAAAAGTGCCCCGCAGTGGTTCAGCGGGCCCAGAGCGCCTCCAAGTC
AGCCAGGAGCCTCGCGGCCTGAGGGCGCCACGCCCAGCTGACCAGGAACCAGGAGGGCCC
TGCCACCCGCTCGAGGTGAACCAACAGACCGATGTGAAAGGAGATTTGAATGACCTGGGA
GCGGAAGCCCTGGGAGTGGCCCCATCACCTGCCAGGCAGGGCTTCGATCTCAGGCGGGAG
GCCTCTGCAGCTGCAGTTACCTGCTCTGTCCTTCCCCTCTCTTGCTCGTTGGGTCTCTCC
ATCCCTAACACTCTGGTCCCCCAGCACAGACCAGCTGCTGCCTTCCTCCCACTTCCTTTT
CTGCCGAGTGATGCAGAATCTCTCCCTTCTGCTTCTCATTGGGGCAGATGATCCCAGCCC
CAGATCAGGGCCAGGGCTTTGTGCCGCCCTGGAAAGAAAGAAGGGAAACGACAGGGGCAG
CTTAGACATACATCACTGTGGTCCTGTGAAAGTCAAGGCCACAGCTTTTCTGTCTCTTAC
TCCCTGGTTCGCTTCTGGTGGCCGTGGTGGCCCCAGGCTTCTCCCTTGTCTGACCAGACC
AGTACTCGTGTCCGCCTCCTGCTCCTGTGGGTTCCGTGAAGTGCTCCTTCCCTCACCCTT
GACTTTACCCGCTGTCTTCCTTACCTGAGTTCCAGCAGATCATTTGGGCCCCTTTTTCCT
TCCTTAGACCTGGGACAGGATCCCTCTAGTCAAAAAGAAACGGATGTAAACAGTCACTGT
ATGAGTTTGTCACTTACTTCGGGGCAAAGAGCAGACATCTCTGGACAGCGTCAGGCCCTA
TCACAGAGTGACCTGAATCCTTAGGAGTGGCTTGGGCCGACATGGATCCTTCCCACTGGA
CCAGTAGGTCAGGCCCACCTCAACCCCTTGGCGTTCAGGTAGAATTGGACCCATGCTGGA
CGGCAGTGAACTAAAGAGCGTTGGGTTCACTGGAACTCTCCCACCGTGAGCCTTGGCCAT
CGGGCCTCAGGATCAGATCTTGACCAATAGGATCCCTGCACAGTTCATCACAGGGGCCTC
CCATGACCCTGTGACCCAAACACACCCCCACCCCCACCCCCAGCCCCTGATCCTCACGCT
CAGTGTCCCCTCCACATAGATTGTGGTGGAAATTATAGCTGTGTGCCTCTGTTTATTCTC
TGACTTGTACTGTAGAAACAAGTGTTTATGAGGAATAAACAAATCACCAGAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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128-245, gnl|bosTau2|chr26 (10496639-10496756) |
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128-245, gnl|canFam2|chr28 (13873080-13873212) |
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128-245, gnl|danRer3|chr13 (42030046-42030178) |
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128-245, gnl|dasNov1|scaffold_44173 (40269-40137) |
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128-245, gnl|echTel1|scaffold_296900 (1931-1801) |
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128-245, gnl|fr1|chrUn (156910848-156910726) |
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128-245, gnl|galGal2|chrUn (64571386-64571517) |
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128-245, gnl|hg17|chr10 (99366951-99367083) |
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128-245, gnl|Hg17|chr10 (99367070-99366953) |
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128-245, gnl|mm7|chr19 (41971800-41971932) |
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128-245, gnl|Mm7|chr19 (41971919-41971802) |
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128-245, gnl|monDom2|scaffold_14 (24831015-24830883) |
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128-245, gnl|oryCun1|scaffold_204804 (95948-96080) |
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128-245, gnl|panTro1|chr8 (101103894-101104026) |
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128-245, gnl|rheMac2|chr9 (97199285-97199417) |
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128-245, gnl|rn3|chr1 (249031941-249031809) |
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128-245, gnl|tetNig1|chrUn_random (111684658-111684539) |
| |
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353-1672, gnl|bosTau2|chr26 (10497508-10498821) |
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353-1672, gnl|Hg17|chr10 (99366159-99364307) |
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353-1672, gnl|Mm7|chr19 (41970095-41968788) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
128-245, gnl|bosTau2|chr26 (10496639-10496756) |
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128-245, gnl|canFam2|chr28 (13873080-13873212) |
|
128-245, gnl|danRer3|chr13 (42030046-42030178) |
|
128-245, gnl|dasNov1|scaffold_44173 (40269-40137) |
|
128-245, gnl|echTel1|scaffold_296900 (1931-1801) |
|
128-245, gnl|fr1|chrUn (156910848-156910726) |
|
128-245, gnl|galGal2|chrUn (64571386-64571517) |
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128-245, gnl|hg17|chr10 (99366951-99367083) |
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128-245, gnl|Hg17|chr10 (99367070-99366953) |
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128-245, gnl|mm7|chr19 (41971800-41971932) |
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128-245, gnl|Mm7|chr19 (41971919-41971802) |
|
128-245, gnl|monDom2|scaffold_14 (24831015-24830883) |
|
128-245, gnl|oryCun1|scaffold_204804 (95948-96080) |
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128-245, gnl|panTro1|chr8 (101103894-101104026) |
|
128-245, gnl|rheMac2|chr9 (97199285-97199417) |
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128-245, gnl|rn3|chr1 (249031941-249031809) |
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128-245, gnl|tetNig1|chrUn_random (111684658-111684539) |
| |
|
353-1672, gnl|bosTau2|chr26 (10497508-10498821) |
|
353-1672, gnl|Hg17|chr10 (99366159-99364307) |
|
353-1672, gnl|Mm7|chr19 (41970095-41968788) |
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ecc (0.345105) |
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fcc (0.197785) |
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nlu (0.191681) |
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ssp (0.13552) |
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cov (0.132153) |
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eru (0.120048) |
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ebs (0.118301) |
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ecc (0.345105) |
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fcc (0.197785) |
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nlu (0.191681) |
|
ssp (0.13552) |
|
cov (0.132153) |
|
eru (0.120048) |
|
ebs (0.118301) |
