Non-Coding RNA Search

Ss1.1-Pig4-TMW8050J23.3

Sequence:


               
               GTTTGAGAAGTGAATTACTCTTTGTTCACATTCTTAATTAGTCTGAAATGAAGATGTAGG
TTATCTGGCTCAGCTTTGACTTCTTCCTAGGAGCTGTCAGTGTATGTAAGGTATCTAGGG
CTGGGTAGTGCCTAAGGTGTGATGGGTACCAGTCATTGTGCCACAGATGTGACTAGAAAG
CTTCATAATCTAGAGTTGGTTTGTAGGTTCAGATAATCCAGAAGGCAAACCTAATACTGA
GAAGAAAAAAAAATGGATTCAGATTATAAGATCTAGACGTCAACACTGTAATTGGGATCA
TTCTCTCATGTTAAAAGACGCTTTAAGAAATTTCTGGGCTTCCCGTTAGGAAATCTTGGA
GCCTGATCTTAGAAACATAGTGCCCCAAAAGGTTGATGCTTCTTCCATGATCTTATTTCT
GTGAATATTTTTGGTGGGTTTGTTTTGTTTTGTTTTTTTAAGATGTTCGTCAGAAATACA
GTTTGGGGGTTTTGTTTTCTTCTAATATAAACTTCAAATTTTGAGGGAAGAAACTAGTGT
CTATAAACAGAGTTCTGTTATTTTGCCTATTTGAGAGAACGAAAATTTTAACTTGCATGA
AAAGGCAAACCTCCACTGCCTTTCAAAATATGTTTAAAGATAAGTTACTTAAGAATTGGC
TTTGACCAAAGTTCTCTTGTTTTCAGGGAAAGAACAAGCTTTTAAAACCACAGCCTTTTA
AAACAAGGGAGGGGGGAATGCTACAACATGAAATTTGGCTTTCTAAACATGCAGCATTCT
TCAACTGGGCTTTCTTGTGTTGATACTACATCACATGGTAATAGGCAGATTTGTCTAAAC
ATTGTTAGCTGCCCTCCAAGTGGGTAATTGTATAGGTAAATGCCTGCACCCATACAAATG
TAATAGCAAATCTAGTTCTTATTCCACACCTATGGACCTACAGCATTGGATGTGCTAAAC
CACTGTAATTCTAACACTGGCCCATTTGAGAATAAAGTTGACTGATAAAATGTTTAGTTC
CTTGCTAACTTTAAGTAAAATCTGAGTCTCTGCAACTTGCCACATGTTCACCTGTGGCTG
GATGGAGTATTAAGCTGGTAGAGAGCAAACTAGAAGAGAGTGATTATCTTGATAGCCCCT
TTCTTTTCCCTGATAGTTACTGACATACCATAGTGCCTTTATGGCCAGTTTGAGTCCTTC
CTGCTCTGTGACAACGTTCTGCTCTTCCTATGTTGTTACCATCTTTTTTTCTTGGTGTCT
TTTTTTCTCCCACTTTGTTAACCTATTTTATGCTTTATTGCCTCAATAAAATGTTTACTG
AGGGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGAGAAGTGAATTACTCTTTGTTCACATTCTTAATTAGTCTGAAATGAAGATGTAGG
TTATCTGGCTCAGCTTTGACTTCTTCCTAGGAGCTGTCAGTGTATGTAAGGTATCTAGGG
CTGGGTAGTGCCTAAGGTGTGATGGGTACCAGTCATTGTGCCACAGATGTGACTAGAAAG
CTTCATAATCTAGAGTTGGTTTGTAGGTTCAGATAATCCAGAAGGCAAACCTAATACTGA
GAAGAAAAAAAAATGGATTCAGATTATAAGATCTAGACGTCAACACTGTAATTGGGATCA
TTCTCTCATGTTAAAAGACGCTTTAAGAAATTTCTGGGCTTCCCGTTAGGAAATCTTGGA
GCCTGATCTTAGAAACATAGTGCCCCAAAAGGTTGATGCTTCTTCCATGATCTTATTTCT
GTGAATATTTTTGGTGGGTTTGTTTTGTTTTGTTTTTTTAAGATGTTCGTCAGAAATACA
GTTTGGGGGTTTTGTTTTCTTCTAATATAAACTTCAAATTTTGAGGGAAGAAACTAGTGT
CTATAAACAGAGTTCTGTTATTTTGCCTATTTGAGAGAACGAAAATTTTAACTTGCATGA
AAAGGCAAACCTCCACTGCCTTTCAAAATATGTTTAAAGATAAGTTACTTAAGAATTGGC
TTTGACCAAAGTTCTCTTGTTTTCAGGGAAAGAACAAGCTTTTAAAACCACAGCCTTTTA
AAACAAGGGAGGGGGGAATGCTACAACATGAAATTTGGCTTTCTAAACATGCAGCATTCT
TCAACTGGGCTTTCTTGTGTTGATACTACATCACATGGTAATAGGCAGATTTGTCTAAAC
ATTGTTAGCTGCCCTCCAAGTGGGTAATTGTATAGGTAAATGCCTGCACCCATACAAATG
TAATAGCAAATCTAGTTCTTATTCCACACCTATGGACCTACAGCATTGGATGTGCTAAAC
CACTGTAATTCTAACACTGGCCCATTTGAGAATAAAGTTGACTGATAAAATGTTTAGTTC
CTTGCTAACTTTAAGTAAAATCTGAGTCTCTGCAACTTGCCACATGTTCACCTGTGGCTG
GATGGAGTATTAAGCTGGTAGAGAGCAAACTAGAAGAGAGTGATTATCTTGATAGCCCCT
TTCTTTTCCCTGATAGTTACTGACATACCATAGTGCCTTTATGGCCAGTTTGAGTCCTTC
CTGCTCTGTGACAACGTTCTGCTCTTCCTATGTTGTTACCATCTTTTTTTCTTGGTGTCT
TTTTTTCTCCCACTTTGTTAACCTATTTTATGCTTTATTGCCTCAATAAAATGTTTACTG
AGGGAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               322-1327, gnl|bosTau2|chr13 (52819608-52818617)
               

               
               322-1327, gnl|Hg17|chr20 (41524762-41525659)
               

               
               322-1327, gnl|Mm7|chr2 (162677100-162678011)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               322-1327, gnl|bosTau2|chr13 (52819608-52818617)
               

               
               322-1327, gnl|Hg17|chr20 (41524762-41525659)
               

               
               322-1327, gnl|Mm7|chr2 (162677100-162678011)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               thg (0.253582)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               spc (0.113366)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               thg (0.253582)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               spc (0.113366)

	322-1327, gnl\|bosTau2\|chr13 (52819608-52818617)
	322-1327, gnl\|Hg17\|chr20 (41524762-41525659)
	322-1327, gnl\|Mm7\|chr2 (162677100-162678011)

	tra (0.369276)
	vin (0.332557)
	tbr (0.308356)
	thg (0.253582)
	nms (0.213858)
	tes (0.207814)
	mgm (0.180343)
	fty (0.17584)
	fbs (0.175346)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	pty (0.142714)
	nca (0.136874)
	ssp (0.13552)
	kid (0.129735)
	ret (0.128733)
	bla (0.124347)
	cly (0.120642)
	spc (0.113366)