Ss1.1-Pig4-TMW8050K01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGGATCCCAAAGTACCATCAGCCAAGGAAAGAGAAAAGGAGGCAAAAGCCTCTGGAGG TTTTGGGAAAGAGAGCAAAGAAAAAGAACCTAAGACCAAAGGGAAAGATGCCAAAGATGG AAAGAAGGACTCCAGTGCTGCCCAACCAGGAGTGGCTTTTTCAGTTGATAATACGATCAA ACGGCCAAATCCAGCACCTGGAACTAGGAAGAAATCTAGCAATGCAGAGGTAATTAAAGA GCTCAACAAATGCCGGGAAGAGAATTCAATGCGTTTGGACTTATCCAAGAGGTCTATACA CATATTGCCATCATCAATCAAAGAGTTGACTCAATTAACAGAACTTTATTTATATAGCAA CAAATTACAGTCCCTCCCAGCTGAAGTGGGCTGTCTAGTAAATCTCATGACACTGGCTTT AAGTGAAAATTCACTTACCAGTTTGCCTGACTCTCTTGATAACTTGAAGAAGCTGCGGAT GCTTGATTTACGGCATAATAAACTAAGAGAAATTCCTTCAGTGGTGTACAGGCTAGATTC TCTCACCACTCTTTACCTTCGCTTTAATCGTATAACTACTGTGGAAAAAGACATCAAAAA CCTGTCAAAACTGAGCATGCTTAGCATTCGAGAGAACAAAATCAAACAACTACCTGCTGA AATTGGTGAATTATGTAACCTCATTACGCTGGATGTAGCTCACAATCAACTTGAACACCT TCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGAATT GCTAGACCTCCCAGATACTATAGGAAACCTGTCCAGTTTAAGTCGTCTTGGTCTGAGATA TAACAGACTGTCAGCAATACCCAGATCATTGGCAAAGTGCAGTGCACTTGAAGAATTAAA TTTAGAGAACAATAATATCTCTACTTTACCAGAGAGTCTTTTATCAAGTCTTGTGAAACT AAATAGTTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTAGGTGGTCCATCTCA ATTTTCCACCATCTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGG GATTTTCTCCAGAGCAAAAGTATTAAGTAAACTGAATATGAAGGACAATCAGTTGACATC ACTTCCCTTGGATTTTGGAACTTGGACCAGTATGGTAGAGTTGAATTTAGCTACTAATCA GCTCACAAAGATCCCTGAGGATGTGTCTGGTCTTGTTTCTCTTGAGGTTCTGATATTATC AAACAATCTTCTAAAGAAGCTTCCCCATGGTCTTGGAAACCTTAGGAAGTTAAGAGAGTT GGATCTAGAGGAGAACAAATTGGAATCCTTGCCAAATGAAATTGCCTATCTTAAGGATTT ACAGAAATTAGTCTTGACAAACAACCAGTTGACCACTCTTCCCAGAGGCATTGGTCACCT TACCAATCTCACACATTTAGGCCTTGGAGAGAACCTACTTACTCATCTTCCTGAGGAAAT TGGTACACTGGAGAATCTAGAAGAACTGTATTTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGGATCCCAAAGTACCATCAGCCAAGGAAAGAGAAAAGGAGGCAAAAGCCTCTGGAGG TTTTGGGAAAGAGAGCAAAGAAAAAGAACCTAAGACCAAAGGGAAAGATGCCAAAGATGG AAAGAAGGACTCCAGTGCTGCCCAACCAGGAGTGGCTTTTTCAGTTGATAATACGATCAA ACGGCCAAATCCAGCACCTGGAACTAGGAAGAAATCTAGCAATGCAGAGGTAATTAAAGA GCTCAACAAATGCCGGGAAGAGAATTCAATGCGTTTGGACTTATCCAAGAGGTCTATACA CATATTGCCATCATCAATCAAAGAGTTGACTCAATTAACAGAACTTTATTTATATAGCAA CAAATTACAGTCCCTCCCAGCTGAAGTGGGCTGTCTAGTAAATCTCATGACACTGGCTTT AAGTGAAAATTCACTTACCAGTTTGCCTGACTCTCTTGATAACTTGAAGAAGCTGCGGAT GCTTGATTTACGGCATAATAAACTAAGAGAAATTCCTTCAGTGGTGTACAGGCTAGATTC TCTCACCACTCTTTACCTTCGCTTTAATCGTATAACTACTGTGGAAAAAGACATCAAAAA CCTGTCAAAACTGAGCATGCTTAGCATTCGAGAGAACAAAATCAAACAACTACCTGCTGA AATTGGTGAATTATGTAACCTCATTACGCTGGATGTAGCTCACAATCAACTTGAACACCT TCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGAATT GCTAGACCTCCCAGATACTATAGGAAACCTGTCCAGTTTAAGTCGTCTTGGTCTGAGATA TAACAGACTGTCAGCAATACCCAGATCATTGGCAAAGTGCAGTGCACTTGAAGAATTAAA TTTAGAGAACAATAATATCTCTACTTTACCAGAGAGTCTTTTATCAAGTCTTGTGAAACT AAATAGTTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTAGGTGGTCCATCTCA ATTTTCCACCATCTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGG GATTTTCTCCAGAGCAAAAGTATTAAGTAAACTGAATATGAAGGACAATCAGTTGACATC ACTTCCCTTGGATTTTGGAACTTGGACCAGTATGGTAGAGTTGAATTTAGCTACTAATCA GCTCACAAAGATCCCTGAGGATGTGTCTGGTCTTGTTTCTCTTGAGGTTCTGATATTATC AAACAATCTTCTAAAGAAGCTTCCCCATGGTCTTGGAAACCTTAGGAAGTTAAGAGAGTT GGATCTAGAGGAGAACAAATTGGAATCCTTGCCAAATGAAATTGCCTATCTTAAGGATTT ACAGAAATTAGTCTTGACAAACAACCAGTTGACCACTCTTCCCAGAGGCATTGGTCACCT TACCAATCTCACACATTTAGGCCTTGGAGAGAACCTACTTACTCATCTTCCTGAGGAAAT TGGTACACTGGAGAATCTAGAAGAACTGTATTTGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-159, - strand, RNAz p=0.997293 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-159, - strand, RNAz p=0.997293 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-667, gnl|bosTau2|chr26 (20253164-20252498) | |
| 1-667, gnl|Hg17|chr10 (112714145-112714811) | |
| 1-667, gnl|Mm7|chr19 (53900590-53901256) | |
| 802-934, gnl|bosTau2|chr26 (20211051-20210919) | |
| 802-934, gnl|canFam2|chr28 (25324657-25324807) | |
| 802-934, gnl|danRer3|chr22 (41294745-41294896) | |
| 802-934, gnl|echTel1|scaffold_311143 (63616-63767) | |
| 802-934, gnl|fr1|chrUn (226402656-226402512) | |
| 802-934, gnl|galGal2|chr6 (25274355-25274505) | |
| 802-934, gnl|hg17|chr10 (112750152-112750304) | |
| 802-934, gnl|Hg17|chr10 (112750161-112750293) | |
| 802-934, gnl|loxAfr1|scaffold_70363 (8886-8735) | |
| 802-934, gnl|mm7|chr19 (53930410-53930561) | |
| 802-934, gnl|Mm7|chr19 (53930418-53930550) | |
| 802-934, gnl|monDom2|scaffold_14 (51996070-51995924) | |
| 802-934, gnl|oryCun1|scaffold_197613 (39278-39127) | |
| 802-934, gnl|panTro1|chr8 (114676299-114676451) | |
| 802-934, gnl|rheMac2|chr9 (110701199-110701351) | |
| 802-934, gnl|rn3|chr3 (44518113-44517982) | |
| 802-934, gnl|tetNig1|chr18 (2432522-2432669) | |
| 802-934, gnl|xenTro1|scaffold_1382 (56153-56009) | |
| 1236-1384, gnl|bosTau2|chr26 (20202772-20202624) | |
| 1236-1384, gnl|Hg17|chr10 (112758985-112759133) | |
| 1236-1384, gnl|Mm7|chr19 (53942329-53942477) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-667, gnl|bosTau2|chr26 (20253164-20252498) | |
| 1-667, gnl|Hg17|chr10 (112714145-112714811) | |
| 1-667, gnl|Mm7|chr19 (53900590-53901256) | |
| 802-934, gnl|bosTau2|chr26 (20211051-20210919) | |
| 802-934, gnl|canFam2|chr28 (25324657-25324807) | |
| 802-934, gnl|danRer3|chr22 (41294745-41294896) | |
| 802-934, gnl|echTel1|scaffold_311143 (63616-63767) | |
| 802-934, gnl|fr1|chrUn (226402656-226402512) | |
| 802-934, gnl|galGal2|chr6 (25274355-25274505) | |
| 802-934, gnl|hg17|chr10 (112750152-112750304) | |
| 802-934, gnl|Hg17|chr10 (112750161-112750293) | |
| 802-934, gnl|loxAfr1|scaffold_70363 (8886-8735) | |
| 802-934, gnl|mm7|chr19 (53930410-53930561) | |
| 802-934, gnl|Mm7|chr19 (53930418-53930550) | |
| 802-934, gnl|monDom2|scaffold_14 (51996070-51995924) | |
| 802-934, gnl|oryCun1|scaffold_197613 (39278-39127) | |
| 802-934, gnl|panTro1|chr8 (114676299-114676451) | |
| 802-934, gnl|rheMac2|chr9 (110701199-110701351) | |
| 802-934, gnl|rn3|chr3 (44518113-44517982) | |
| 802-934, gnl|tetNig1|chr18 (2432522-2432669) | |
| 802-934, gnl|xenTro1|scaffold_1382 (56153-56009) | |
| 1236-1384, gnl|bosTau2|chr26 (20202772-20202624) | |
| 1236-1384, gnl|Hg17|chr10 (112758985-112759133) | |
| 1236-1384, gnl|Mm7|chr19 (53942329-53942477) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) |