Non-Coding RNA Search

Ss1.1-Pig4-TMW8050K03.3

Sequence:


               
               GAGTAGCTCATGCCACACTGACGAAATACACAGATACTGAGTTCTTTCTGCAGGCACCAC
CTGCAGACACAGGTTCGGCAGTAGCTCAGCCTCCGGATTAGGAACTGCTTCCATAACGGC
ACCTGCTCAACGCGGTTACCCAGCAATACAGATTTCAGTGTGATGTTAGCACGTGGTCCG
GTGTGTTAGCCTCGTGCAGTCCGTCGTAGTGCTGTTAGAATCCCTCACCAGGTAGACTCG
ACCTTGGCTCTGGCCAGCCCTGACCTTGGCTACTCGAGCTCCCTCCCGCACTGCCCTGGC
TTCGTCTCCTCGTCACAGACGCCCGTCTTGTGTGGCTCCCATCCCGGGACACACGAGGGG
CAGCAGCCACGGCGCCCCTCACCCCGCACACCTTTGGGACCTGGACCCCTGGCGACGGGG
ACATCTCCCTGGCGTCTGCCTCCCGGGCTGGAGCTGCTGCCACACAAAGACGCGGTAGCC
TCCCCCACCTGCCTCAGACACACGCAGCAAACCTCACCAACCACTTCTTGGCGTGTGAGC
CCCTGGGAGCCCGGCCGCCCCCAGCCCACCCCACACCCCAAGGAGGTTCCTGCGGGGGCG
GGGGAGAGGCTGGAGGCCCACGCACTTGGGGATGATGTGAACGGGGTCCCTCGGTCCTTT
TCGGGCCCCTCCGGTTTCTGTGTTGCCTATCTGTGTTCGAAGCATATTAAAATGAACTTG
AGGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTAGCTCATGCCACACTGACGAAATACACAGATACTGAGTTCTTTCTGCAGGCACCAC
CTGCAGACACAGGTTCGGCAGTAGCTCAGCCTCCGGATTAGGAACTGCTTCCATAACGGC
ACCTGCTCAACGCGGTTACCCAGCAATACAGATTTCAGTGTGATGTTAGCACGTGGTCCG
GTGTGTTAGCCTCGTGCAGTCCGTCGTAGTGCTGTTAGAATCCCTCACCAGGTAGACTCG
ACCTTGGCTCTGGCCAGCCCTGACCTTGGCTACTCGAGCTCCCTCCCGCACTGCCCTGGC
TTCGTCTCCTCGTCACAGACGCCCGTCTTGTGTGGCTCCCATCCCGGGACACACGAGGGG
CAGCAGCCACGGCGCCCCTCACCCCGCACACCTTTGGGACCTGGACCCCTGGCGACGGGG
ACATCTCCCTGGCGTCTGCCTCCCGGGCTGGAGCTGCTGCCACACAAAGACGCGGTAGCC
TCCCCCACCTGCCTCAGACACACGCAGCAAACCTCACCAACCACTTCTTGGCGTGTGAGC
CCCTGGGAGCCCGGCCGCCCCCAGCCCACCCCACACCCCAAGGAGGTTCCTGCGGGGGCG
GGGGAGAGGCTGGAGGCCCACGCACTTGGGGATGATGTGAACGGGGTCCCTCGGTCCTTT
TCGGGCCCCTCCGGTTTCTGTGTTGCCTATCTGTGTTCGAAGCATATTAAAATGAACTTG
AGGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-149, - strand, RNAz p=0.999209
               

               
               41-156, - strand, RNAz p=0.923703
               

               
               481-627, - strand, RNAz p=0.998382

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-149, - strand, RNAz p=0.999209
               

               
               41-156, - strand, RNAz p=0.923703
               

               
               481-627, - strand, RNAz p=0.998382

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-726, gnl|bosTau2|chr12 (15613430-15612693)
               

               
               1-726, gnl|canFam2|chr25 (13355706-13355119)
               

               
               1-726, gnl|dasNov1|scaffold_61259 (6619-7224)
               

               
               1-726, gnl|hg17|chr13 (28977180-28977810)
               

               
               1-726, gnl|Hg17|chr13 (28977270-28978075)
               

               
               1-726, gnl|loxAfr1|scaffold_6804 (18495-17896)
               

               
               1-726, gnl|mm7|chr5 (147209937-147210509)
               

               
               1-726, gnl|Mm7|chr5 (147210021-147210763)
               

               
               1-726, gnl|monDom2|scaffold_15 (38891999-38892583)
               

               
               1-726, gnl|oryCun1|scaffold_188944 (48079-48658)
               

               
               1-726, gnl|rheMac2|chr17 (9043917-9044556)
               

               
               1-726, gnl|rn3|chr12 (7287318-7286733)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-726, gnl|bosTau2|chr12 (15613430-15612693)
               

               
               1-726, gnl|canFam2|chr25 (13355706-13355119)
               

               
               1-726, gnl|dasNov1|scaffold_61259 (6619-7224)
               

               
               1-726, gnl|hg17|chr13 (28977180-28977810)
               

               
               1-726, gnl|Hg17|chr13 (28977270-28978075)
               

               
               1-726, gnl|loxAfr1|scaffold_6804 (18495-17896)
               

               
               1-726, gnl|mm7|chr5 (147209937-147210509)
               

               
               1-726, gnl|Mm7|chr5 (147210021-147210763)
               

               
               1-726, gnl|monDom2|scaffold_15 (38891999-38892583)
               

               
               1-726, gnl|oryCun1|scaffold_188944 (48079-48658)
               

               
               1-726, gnl|rheMac2|chr17 (9043917-9044556)
               

               
               1-726, gnl|rn3|chr12 (7287318-7286733)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ton (0.1755)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               cag (0.151194)

	1-149, - strand, RNAz p=0.999209
	41-156, - strand, RNAz p=0.923703
	481-627, - strand, RNAz p=0.998382

	1-726, gnl\|bosTau2\|chr12 (15613430-15612693)
	1-726, gnl\|canFam2\|chr25 (13355706-13355119)
	1-726, gnl\|dasNov1\|scaffold_61259 (6619-7224)
	1-726, gnl\|hg17\|chr13 (28977180-28977810)
	1-726, gnl\|Hg17\|chr13 (28977270-28978075)
	1-726, gnl\|loxAfr1\|scaffold_6804 (18495-17896)
	1-726, gnl\|mm7\|chr5 (147209937-147210509)
	1-726, gnl\|Mm7\|chr5 (147210021-147210763)
	1-726, gnl\|monDom2\|scaffold_15 (38891999-38892583)
	1-726, gnl\|oryCun1\|scaffold_188944 (48079-48658)
	1-726, gnl\|rheMac2\|chr17 (9043917-9044556)
	1-726, gnl\|rn3\|chr12 (7287318-7286733)