Ss1.1-Pig4-TMW8050K06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGGCCTCTCGGAAGAAGAAGCTCAAAAGAAAATTTGGATGGTTGACAAGTTTGGTTTA TTATTTAAGGGGCGGAAAGCTAAAATAGACAGTCATCAGGAACCGTTTGCTCACCCAGCC CCAGACAACATTCCTGATAATTTTGAAGATGCAGTAAATATACTTAAGCCTTCAGCAATA ATTGGAGTTGCAGGAGCTGGCCGACTTTTTACTCATAATGTAATCAAAGCCATGGCTGAT ATCAATGAAAGGCCTATAATATTTGCATTAAGTAATCCTACAGCACAGGCTGAGTGTACA GCCGAAGAAGCATATACACTTACAGAGGGACGGTGTTTATTTGCCAGTGGCAGTCCATTT GGGCCAGTGAAACTCAGTGATGGGCAGGTCTTTACACCAGGTCAAGGAAACAATGTATAT ATTTTTCCAGGTGTAGCTTTAGCTGTTATTCTCTGTAACACCCGGCATATAAGTGACCAT GTTTTCCTGGAGGCTGCAAAGGCTCTGACAAGTCAATTGACGGATAAAGAGCTAGCTCAG GGGAGACTTTACCCACCACTTGCTAATATTCAGGAAGTTTCTATTAACATTGCTATTAAA GTTACAGAATACCTATATGCTAATAAAATGGCTTTCCGATACCCAGAACCTGAGGACAAG GCCAGATACATTAGAGAAAGAATATGGCGAAGTGAATATGATTCCCTGCTGCCAGATGTG TATGAATGGCCAGAGTCTGCATCTCACCCTCCCCAGATAACGGAATAAAAGCACACCACT GATAAATAAATGCCTTCCCTGCTTCAGGGAACTCCTCCTTTTCTAGACAAAGAGAGAATC TTCTCAAATTCATGTTTTTTGTGTATGTTATTCTCCCTCACCACTTTGCTTATATTTCCC CATGAATCTGCCGTTCTGTACAGGGCAGATGTGTTAACTGCATTGTTAATCCCCACGTGC AACCTGCAATCAAGTGACCATAATGCTCTCAGTCTGATTTGTAGATTACACCACATCAAA GAGATATTAAAAATGTACTTATGAATGTCTTGTGCTCTTGTTCACCCTTGCCAAAGTATT TACTATTATACCTAATAATCTCTCACCCAATTTTTTTAGGGCTAAGATAGAAATTAATAC TTCTGTGGATATGAATATAGAATTTTGAGAAGCTAATAAATTCAACCAAATTCTACAGAT AAATTATCAGTATCTAAAAATGTCCTTTTATTTCTGCTTCATTTATCTTCATGCTCTGAA ATTGCTTTCCAGTAAACAGATCTGGAAAAATAAGAAAAATCTATTATTTCTTTTCTGGAA TTAAACTGAGGCTTAACTGTAATGTTGAGAGAAATGGGAACTACTGATGCCTTTAGACCA ACTAGTCATTGTTTTCAACAGTGTATAAAAATCACAGTGTAACTTTTTAAATAAAGGTAA TATCTTAAATTTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGGCCTCTCGGAAGAAGAAGCTCAAAAGAAAATTTGGATGGTTGACAAGTTTGGTTTA TTATTTAAGGGGCGGAAAGCTAAAATAGACAGTCATCAGGAACCGTTTGCTCACCCAGCC CCAGACAACATTCCTGATAATTTTGAAGATGCAGTAAATATACTTAAGCCTTCAGCAATA ATTGGAGTTGCAGGAGCTGGCCGACTTTTTACTCATAATGTAATCAAAGCCATGGCTGAT ATCAATGAAAGGCCTATAATATTTGCATTAAGTAATCCTACAGCACAGGCTGAGTGTACA GCCGAAGAAGCATATACACTTACAGAGGGACGGTGTTTATTTGCCAGTGGCAGTCCATTT GGGCCAGTGAAACTCAGTGATGGGCAGGTCTTTACACCAGGTCAAGGAAACAATGTATAT ATTTTTCCAGGTGTAGCTTTAGCTGTTATTCTCTGTAACACCCGGCATATAAGTGACCAT GTTTTCCTGGAGGCTGCAAAGGCTCTGACAAGTCAATTGACGGATAAAGAGCTAGCTCAG GGGAGACTTTACCCACCACTTGCTAATATTCAGGAAGTTTCTATTAACATTGCTATTAAA GTTACAGAATACCTATATGCTAATAAAATGGCTTTCCGATACCCAGAACCTGAGGACAAG GCCAGATACATTAGAGAAAGAATATGGCGAAGTGAATATGATTCCCTGCTGCCAGATGTG TATGAATGGCCAGAGTCTGCATCTCACCCTCCCCAGATAACGGAATAAAAGCACACCACT GATAAATAAATGCCTTCCCTGCTTCAGGGAACTCCTCCTTTTCTAGACAAAGAGAGAATC TTCTCAAATTCATGTTTTTTGTGTATGTTATTCTCCCTCACCACTTTGCTTATATTTCCC CATGAATCTGCCGTTCTGTACAGGGCAGATGTGTTAACTGCATTGTTAATCCCCACGTGC AACCTGCAATCAAGTGACCATAATGCTCTCAGTCTGATTTGTAGATTACACCACATCAAA GAGATATTAAAAATGTACTTATGAATGTCTTGTGCTCTTGTTCACCCTTGCCAAAGTATT TACTATTATACCTAATAATCTCTCACCCAATTTTTTTAGGGCTAAGATAGAAATTAATAC TTCTGTGGATATGAATATAGAATTTTGAGAAGCTAATAAATTCAACCAAATTCTACAGAT AAATTATCAGTATCTAAAAATGTCCTTTTATTTCTGCTTCATTTATCTTCATGCTCTGAA ATTGCTTTCCAGTAAACAGATCTGGAAAAATAAGAAAAATCTATTATTTCTTTTCTGGAA TTAAACTGAGGCTTAACTGTAATGTTGAGAGAAATGGGAACTACTGATGCCTTTAGACCA ACTAGTCATTGTTTTCAACAGTGTATAAAAATCACAGTGTAACTTTTTAAATAAAGGTAA TATCTTAAATTTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 169-328, gnl|bosTau2|chr24 (39334123-39333964) | |
| 169-328, gnl|canFam2|chr1 (27034546-27034305) | |
| 169-328, gnl|canFam2|chr1 (27034352-27034494) | |
| 169-328, gnl|danRer3|chr12 (22828178-22828364) | |
| 169-328, gnl|danRer3|chr12 (22828355-22828221) | |
| 169-328, gnl|dasNov1|scaffold_107160 (1406-1165) | |
| 169-328, gnl|dasNov1|scaffold_107160 (1219-1361) | |
| 169-328, gnl|echTel1|scaffold_297981 (13275-13512) | |
| 169-328, gnl|echTel1|scaffold_297981 (13461-13319) | |
| 169-328, gnl|fr1|chrUn (22465288-22465077) | |
| 169-328, gnl|fr1|chrUn (22465115-22465249) | |
| 169-328, gnl|hg17|chr18 (46706080-46706315) | |
| 169-328, gnl|Hg17|chr18 (46706111-46706267) | |
| 169-328, gnl|hg17|chr9 (29815183-29815333) | |
| 169-328, gnl|loxAfr1|scaffold_9982 (34540-34780) | |
| 169-328, gnl|loxAfr1|scaffold_9982 (34727-34585) | |
| 169-328, gnl|mm7|chr18 (74180226-74179990) | |
| 169-328, gnl|mm7|chr18 (74180031-74180173) | |
| 169-328, gnl|Mm7|chr18 (74180189-74180030) | |
| 169-328, gnl|monDom2|scaffold_42 (6593608-6593466) | |
| 169-328, gnl|monDom2|scaffold_95 (141209-141465) | |
| 169-328, gnl|oryCun1|scaffold_92375 (2910-2682) | |
| 169-328, gnl|oryCun1|scaffold_92375 (2726-2868) | |
| 169-328, gnl|panTro1|chr11 (30298657-30298807) | |
| 169-328, gnl|panTro1|chr17 (43301848-43302082) | |
| 169-328, gnl|rheMac2|chr18 (44027109-44027340) | |
| 169-328, gnl|rheMac2|chr18 (44027293-44027151) | |
| 169-328, gnl|rn3|chr18 (70636176-70635952) | |
| 169-328, gnl|rn3|chr18 (70635992-70636134) | |
| 169-328, gnl|tetNig1|chr12 (8212831-8212995) | |
| 169-328, gnl|tetNig1|chr12 (8212985-8212851) | |
| 169-328, gnl|xenTro1|scaffold_731 (495977-496195) | |
| 169-328, gnl|xenTro1|scaffold_731 (496169-496027) | |
| 589-1454, gnl|bosTau2|chr24 (32885205-32886060) | |
| 589-1454, gnl|Hg17|chr18 (46727372-46728258) | |
| 589-1454, gnl|Mm7|chr18 (74165157-74164376) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 169-328, gnl|bosTau2|chr24 (39334123-39333964) | |
| 169-328, gnl|canFam2|chr1 (27034546-27034305) | |
| 169-328, gnl|canFam2|chr1 (27034352-27034494) | |
| 169-328, gnl|danRer3|chr12 (22828178-22828364) | |
| 169-328, gnl|danRer3|chr12 (22828355-22828221) | |
| 169-328, gnl|dasNov1|scaffold_107160 (1406-1165) | |
| 169-328, gnl|dasNov1|scaffold_107160 (1219-1361) | |
| 169-328, gnl|echTel1|scaffold_297981 (13275-13512) | |
| 169-328, gnl|echTel1|scaffold_297981 (13461-13319) | |
| 169-328, gnl|fr1|chrUn (22465288-22465077) | |
| 169-328, gnl|fr1|chrUn (22465115-22465249) | |
| 169-328, gnl|hg17|chr18 (46706080-46706315) | |
| 169-328, gnl|Hg17|chr18 (46706111-46706267) | |
| 169-328, gnl|hg17|chr9 (29815183-29815333) | |
| 169-328, gnl|loxAfr1|scaffold_9982 (34540-34780) | |
| 169-328, gnl|loxAfr1|scaffold_9982 (34727-34585) | |
| 169-328, gnl|mm7|chr18 (74180226-74179990) | |
| 169-328, gnl|mm7|chr18 (74180031-74180173) | |
| 169-328, gnl|Mm7|chr18 (74180189-74180030) | |
| 169-328, gnl|monDom2|scaffold_42 (6593608-6593466) | |
| 169-328, gnl|monDom2|scaffold_95 (141209-141465) | |
| 169-328, gnl|oryCun1|scaffold_92375 (2910-2682) | |
| 169-328, gnl|oryCun1|scaffold_92375 (2726-2868) | |
| 169-328, gnl|panTro1|chr11 (30298657-30298807) | |
| 169-328, gnl|panTro1|chr17 (43301848-43302082) | |
| 169-328, gnl|rheMac2|chr18 (44027109-44027340) | |
| 169-328, gnl|rheMac2|chr18 (44027293-44027151) | |
| 169-328, gnl|rn3|chr18 (70636176-70635952) | |
| 169-328, gnl|rn3|chr18 (70635992-70636134) | |
| 169-328, gnl|tetNig1|chr12 (8212831-8212995) | |
| 169-328, gnl|tetNig1|chr12 (8212985-8212851) | |
| 169-328, gnl|xenTro1|scaffold_731 (495977-496195) | |
| 169-328, gnl|xenTro1|scaffold_731 (496169-496027) | |
| 589-1454, gnl|bosTau2|chr24 (32885205-32886060) | |
| 589-1454, gnl|Hg17|chr18 (46727372-46728258) | |
| 589-1454, gnl|Mm7|chr18 (74165157-74164376) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| sin (0.69979) | |
| cbl (0.688784) | |
| isp (0.601504) | |
| spl (0.572738) | |
| thg (0.507164) | |
| fco (0.471624) | |
| lin (0.436808) | |
| gul (0.355177) | |
| fty (0.351679) | |
| rec (0.346141) | |
| ret (0.257467) | |
| sug (0.254582) | |
| tra (0.246184) | |
| spc (0.226732) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| col (0.195008) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.69979) | |
| cbl (0.688784) | |
| isp (0.601504) | |
| spl (0.572738) | |
| thg (0.507164) | |
| fco (0.471624) | |
| lin (0.436808) | |
| gul (0.355177) | |
| fty (0.351679) | |
| rec (0.346141) | |
| ret (0.257467) | |
| sug (0.254582) | |
| tra (0.246184) | |
| spc (0.226732) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| col (0.195008) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| jej (0.0989218) | |
| ldo (0.0970026) |