Non-Coding RNA Search

Ss1.1-Pig4-TMW8050K08.5

Sequence:


               
               GTTAGCTTAGTATGGGATGAGCAAATAAAGGTTACAGTTTTCTAAGAGAAGTAATTTTAA
TTTTTAATACATTTTTCTGGAACTGCCCATAATGTGAAATTTTCCTAGAACCATTGAGTT
TCTAGTTTAATAGTTTGCTATGCAAATGACCACCTAAAACAATACTGTATATTGGTATTT
TTAGAAAGACTCAAAACAGCTGTAGTTAAACCTTAATGTGAAACTCATACCATTCATAAT
TACATAAGGTATTTTCATTACAAAATAGGTTTCTATAAATTAATAGGCTCTGTATCCTAT
CTTGTAGCATGCAAGGAATGTGTAGGGTGAAAAGTTGAATTTCTTATTACTTATGTATGA
CTGATATGAACAAACAGGAGTTTGATCAGAAGCTGTAGGTAAATCCTCTTCTTCAAGCCA
AAATGTCATATGAAGTGTAATCTACTGGATCTCCCATTTTCTCTTCCTTCTCACGCCTGC
TTTTAAGATCTTATAAGAAAAGGAAAAGTCAGTACTTAATGACTTATGGGACTTTTAAAC
TACATGAAAGTACTTATAAGAACATAAAGTCTCTCTGATAGAGTGTAAATTGCATGGCAG
GCTTCTAAATAAAATGAAATTTGGTTTTCATGAATCTTACAGGTAAGATGTAGGGCTTTA
AAAGAATGAATAGTTTAGCTGCTTTCAGGTACACCAATTCTTTTACTAAATTGATCTCTT
ATTTGATGTCTTTTGGAATCTTCAGTGAAAAACAATTTTCTAATTTCTAAATACATTAAG
AGCTCCATTAAAATGAGTATAAATCACCCTGAAAAGTCCTTTAGAAAATATGTATTGTTT
TATGGCTTCATAGAGGGGCTGAGAGAGAGAGAGCGAGAGAGAGAGTGTGTGTGTGTGTCT
GAAGAAGATGTAATCCGCAAGTAGTTTAGCTCCCTAGCTCTCAGTCATAGAAGAGTAAAA
TATAATGTTATTTAAGTTAATTAGAGGGTAGGGTTTTCCCATATAAATGCCTTTTGTCTT
TCATTTGTTAATATTTGCTCAACTTATCAGCGGATGCTTTGAACACTATCAAAACCTGAG
GATAAACGTTCCCCTTGTATCTATAAGCACGCTTCTCCTGAAGTGTAGCTACATTAGTAA
TTGACACCGTTAATGCATATACCCTGGTACGAGAGTAGGATAAGGATAATGTAATGTCTG
GAAGGATGGTAATGCATTCTTTAGTATATCATGTTGGACTCCCAGATTGTACTGCATTTG
CACATAAATCAAGCCCCATACCCTTAGAATTTGTTATACTGTGGTGATATCGGAACCTAG
TGAGTGGTACACTTGGGTGTTTTCCATGGAGAGTGGATGGACCTCTTTATAAAGGTGGTT
GCTGCAAATTCCAGTTCTTCCAGAAGCCACTTTATTTAGGGTTTATCCACAAATTGTATT
AATTTTAATAAAGCTTTTGTTTCCTAAATGTTTACTGACCACCTTATGCCAAATATCTTG
CAAATAAATATTTTAAGATTTCCTGAATTTTTACAAATGTAAAAAAGAAAAATGTATTAA
TGTAATTTGTTCAGGAAAAGCTACATTCTGAAGGGCTTCTATATATGAATTCTGGGAAAG
AAAAGCCTTTTTGTAATCTATACTCTGTAGTTCCATCTGGATTTTAAGTTTAGATTTCAT
CATGTCTTGGTGCCTCACTCTGTTGATTTATTGGCACTCATAATAAATAGGAGTAGTGAC
GTATGAAAACACAAGTATTCATTAATGTTTCATATCTTCATAAAATTGCATAGTTGTGAA
GCTATATTTTATCTAAGACGTCAAAGAGATCAGAGAAGTGAAAATTTATAAAGACTGTTT
GGAAGTGTGTACAGAAATAGAGTAGACTAGATGTAGAGGTAGGGTAGATCAGAAAGTTGA
TATTTTATAAGATTTAAATTCAGTATGCGGAAAACCTTTTTCTCCTATGAGCATTTTCTA
AAAGCCATCTGATTTGACATTCTTATTAGAGCTGTAGGCAGAATTGTGCAAAGACAAACG
TAAAAATTAAGTTTTTATTTCCCTGTATTAGGAAGTTGAAATAAACTGTTATGAAAAGTG
TTTACTTTGAAGTATTGGTGACCAAGGCTTGCCAATAACTGACGGATAAAGCAGCATTCT
GTGTGTTTACCCTAAGTCATCAGTTTAGGTCATTTGAAAGTTATCAACGTTATAAGTAAG
AACTTGAGGAAGTAGCAGGACAAGCTGTTTGAAGGACAACAGAGTATCCTTGGAAAAGCA
GCCCCACTTGGGCTTTTCAGCTGTGTCAAACATGAATCTAAATCCCCACAGAGTACGGAC
AATTGGTGACAGAGTTGGAAGGAAACAGTTACTGCTCAATGATTTCTTCCATTTTTGTAC
TCACCCTTGATTTGTGTAGGCCGTATTCCAGCTGGCTTTTTAGTGCTAGAAATTGAATAC
AGTAAATAATGTATCACATTTGAGGTTCTAACCTAGTCTGTTAATCTAACCGAAGTTGGA
TTTTTAAAAAGTAATAAAAAGTCAAATGTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAGCTTAGTATGGGATGAGCAAATAAAGGTTACAGTTTTCTAAGAGAAGTAATTTTAA
TTTTTAATACATTTTTCTGGAACTGCCCATAATGTGAAATTTTCCTAGAACCATTGAGTT
TCTAGTTTAATAGTTTGCTATGCAAATGACCACCTAAAACAATACTGTATATTGGTATTT
TTAGAAAGACTCAAAACAGCTGTAGTTAAACCTTAATGTGAAACTCATACCATTCATAAT
TACATAAGGTATTTTCATTACAAAATAGGTTTCTATAAATTAATAGGCTCTGTATCCTAT
CTTGTAGCATGCAAGGAATGTGTAGGGTGAAAAGTTGAATTTCTTATTACTTATGTATGA
CTGATATGAACAAACAGGAGTTTGATCAGAAGCTGTAGGTAAATCCTCTTCTTCAAGCCA
AAATGTCATATGAAGTGTAATCTACTGGATCTCCCATTTTCTCTTCCTTCTCACGCCTGC
TTTTAAGATCTTATAAGAAAAGGAAAAGTCAGTACTTAATGACTTATGGGACTTTTAAAC
TACATGAAAGTACTTATAAGAACATAAAGTCTCTCTGATAGAGTGTAAATTGCATGGCAG
GCTTCTAAATAAAATGAAATTTGGTTTTCATGAATCTTACAGGTAAGATGTAGGGCTTTA
AAAGAATGAATAGTTTAGCTGCTTTCAGGTACACCAATTCTTTTACTAAATTGATCTCTT
ATTTGATGTCTTTTGGAATCTTCAGTGAAAAACAATTTTCTAATTTCTAAATACATTAAG
AGCTCCATTAAAATGAGTATAAATCACCCTGAAAAGTCCTTTAGAAAATATGTATTGTTT
TATGGCTTCATAGAGGGGCTGAGAGAGAGAGAGCGAGAGAGAGAGTGTGTGTGTGTGTCT
GAAGAAGATGTAATCCGCAAGTAGTTTAGCTCCCTAGCTCTCAGTCATAGAAGAGTAAAA
TATAATGTTATTTAAGTTAATTAGAGGGTAGGGTTTTCCCATATAAATGCCTTTTGTCTT
TCATTTGTTAATATTTGCTCAACTTATCAGCGGATGCTTTGAACACTATCAAAACCTGAG
GATAAACGTTCCCCTTGTATCTATAAGCACGCTTCTCCTGAAGTGTAGCTACATTAGTAA
TTGACACCGTTAATGCATATACCCTGGTACGAGAGTAGGATAAGGATAATGTAATGTCTG
GAAGGATGGTAATGCATTCTTTAGTATATCATGTTGGACTCCCAGATTGTACTGCATTTG
CACATAAATCAAGCCCCATACCCTTAGAATTTGTTATACTGTGGTGATATCGGAACCTAG
TGAGTGGTACACTTGGGTGTTTTCCATGGAGAGTGGATGGACCTCTTTATAAAGGTGGTT
GCTGCAAATTCCAGTTCTTCCAGAAGCCACTTTATTTAGGGTTTATCCACAAATTGTATT
AATTTTAATAAAGCTTTTGTTTCCTAAATGTTTACTGACCACCTTATGCCAAATATCTTG
CAAATAAATATTTTAAGATTTCCTGAATTTTTACAAATGTAAAAAAGAAAAATGTATTAA
TGTAATTTGTTCAGGAAAAGCTACATTCTGAAGGGCTTCTATATATGAATTCTGGGAAAG
AAAAGCCTTTTTGTAATCTATACTCTGTAGTTCCATCTGGATTTTAAGTTTAGATTTCAT
CATGTCTTGGTGCCTCACTCTGTTGATTTATTGGCACTCATAATAAATAGGAGTAGTGAC
GTATGAAAACACAAGTATTCATTAATGTTTCATATCTTCATAAAATTGCATAGTTGTGAA
GCTATATTTTATCTAAGACGTCAAAGAGATCAGAGAAGTGAAAATTTATAAAGACTGTTT
GGAAGTGTGTACAGAAATAGAGTAGACTAGATGTAGAGGTAGGGTAGATCAGAAAGTTGA
TATTTTATAAGATTTAAATTCAGTATGCGGAAAACCTTTTTCTCCTATGAGCATTTTCTA
AAAGCCATCTGATTTGACATTCTTATTAGAGCTGTAGGCAGAATTGTGCAAAGACAAACG
TAAAAATTAAGTTTTTATTTCCCTGTATTAGGAAGTTGAAATAAACTGTTATGAAAAGTG
TTTACTTTGAAGTATTGGTGACCAAGGCTTGCCAATAACTGACGGATAAAGCAGCATTCT
GTGTGTTTACCCTAAGTCATCAGTTTAGGTCATTTGAAAGTTATCAACGTTATAAGTAAG
AACTTGAGGAAGTAGCAGGACAAGCTGTTTGAAGGACAACAGAGTATCCTTGGAAAAGCA
GCCCCACTTGGGCTTTTCAGCTGTGTCAAACATGAATCTAAATCCCCACAGAGTACGGAC
AATTGGTGACAGAGTTGGAAGGAAACAGTTACTGCTCAATGATTTCTTCCATTTTTGTAC
TCACCCTTGATTTGTGTAGGCCGTATTCCAGCTGGCTTTTTAGTGCTAGAAATTGAATAC
AGTAAATAATGTATCACATTTGAGGTTCTAACCTAGTCTGTTAATCTAACCGAAGTTGGA
TTTTTAAAAAGTAATAAAAAGTCAAATGTAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1327-1446, + strand, RNAz p=0.793431
               

               
               2433-2545, - strand, RNAz p=0.752652

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1327-1446, + strand, RNAz p=0.793431
               

               
               2433-2545, - strand, RNAz p=0.752652

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               8-1179, gnl|bosTau2|chr26 (7987476-7986320)
               

               
               8-1179, gnl|Hg17|chr10 (98270462-98269236)
               

               
               8-1179, gnl|Mm7|chr19 (41107211-41105941)
               


               
               1247-2545, gnl|bosTau2|chr26 (7986112-7984806)
               

               
               1247-2545, gnl|Hg17|chr10 (98269150-98267861)
               

               
               1247-2545, gnl|Mm7|chr19 (41105857-41104695)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1179, gnl|bosTau2|chr26 (7987476-7986320)
               

               
               8-1179, gnl|Hg17|chr10 (98270462-98269236)
               

               
               8-1179, gnl|Mm7|chr19 (41107211-41105941)
               


               
               1247-2545, gnl|bosTau2|chr26 (7986112-7984806)
               

               
               1247-2545, gnl|Hg17|chr10 (98269150-98267861)
               

               
               1247-2545, gnl|Mm7|chr19 (41105857-41104695)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               liv (0.585137)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	1327-1446, + strand, RNAz p=0.793431
	2433-2545, - strand, RNAz p=0.752652

	8-1179, gnl\|bosTau2\|chr26 (7987476-7986320)
	8-1179, gnl\|Hg17\|chr10 (98270462-98269236)
	8-1179, gnl\|Mm7\|chr19 (41107211-41105941)

	1247-2545, gnl\|bosTau2\|chr26 (7986112-7984806)
	1247-2545, gnl\|Hg17\|chr10 (98269150-98267861)
	1247-2545, gnl\|Mm7\|chr19 (41105857-41104695)

	liv (0.585137)
	ret (0.514933)
	pro (0.512033)
	amn (0.417711)
	cty (0.41632)
	kid (0.389206)
	bla (0.373042)
	gul (0.355177)
	ski (0.29347)
	spl (0.286369)
	ova (0.258264)
	tra (0.246184)
	pan (0.23596)
	aor (0.195274)
	sin (0.174948)
	fhi (0.169578)
	fat (0.147427)
	lin (0.145603)
	csk (0.140746)
	ste (0.135208)
	nmm (0.132802)
	sug (0.127291)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)