Non-Coding RNA Search

Ss1.1-Pig4-TMW8050K12.3

Sequence:


               
               GCCAGGGCTGGGCCCAAGGGCCTGGGAGGGAAGGGTGGGAAGGATGCGGTGGGTCTTCGT
CCACAGGACACGAGAGGCAGGTGTGGGGGCCTCCCCTTCACGTCCACGAGGGTACGGACG
TCCCCTCTGTGCAAGCACAACTCAGGTAGAAATGAGAATGTCATCTTCCTTCACTTTCAA
GGTCCTGGAGTTCAGAGCCGAGCCGGTGGCCCTGCTCAGTGGGGAGCCTGGGCTCTGAGG
ACTCCCTCCCAGCTGCGGCCCTGGCTCTTCCCGTTATCCTGCATGTCTGCTCCTCAGCAC
CCCGGGCTGCCTGCCAGGGCAGCTCAGCATGGCCCCAGCATACTTGTGTAGGGAGCCCCG
AGGCTCTTTCGGTTCCTTAGCGGCATATCCATCTTGACACACAGGAGCGAAGTGTGTGTC
AGCTTTCCCTCTGGGCACCTGGCCGCCCCTGCCTTCTCCCTCCAGCCCGTAGCCGGAATA
GGGTGTTCTGTGTTCTGGACAGTTGCCAGTGTTCTCCCTTTTTTTCACAGCACTTTGCTT
ATTTTTTTTTTTTTTAATAGTCCTTTATAGAGCTCAGTCAGGAAGGGGATTGGGGCACAA
AGCCAAGCCCCCGGCACTGGGAGAGGCCGGGCCACAGCTGCTGCTCCCCTAGGCCTAAGG
CTGTAAGCAAGAGGCAGCTCTGGCCCTCAGCCAGCGTCCTACCCTGCCCAGCTCCAAGGA
CGAGCTCCGGGTACGGAGCACTGGGCCCCAGGCCCTTGTCTCTGGGGCTCTTGGATGGTC
AGTATCTGTGACTGAATAAAGTTCCATTTTGTGGCAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGGGCTGGGCCCAAGGGCCTGGGAGGGAAGGGTGGGAAGGATGCGGTGGGTCTTCGT
CCACAGGACACGAGAGGCAGGTGTGGGGGCCTCCCCTTCACGTCCACGAGGGTACGGACG
TCCCCTCTGTGCAAGCACAACTCAGGTAGAAATGAGAATGTCATCTTCCTTCACTTTCAA
GGTCCTGGAGTTCAGAGCCGAGCCGGTGGCCCTGCTCAGTGGGGAGCCTGGGCTCTGAGG
ACTCCCTCCCAGCTGCGGCCCTGGCTCTTCCCGTTATCCTGCATGTCTGCTCCTCAGCAC
CCCGGGCTGCCTGCCAGGGCAGCTCAGCATGGCCCCAGCATACTTGTGTAGGGAGCCCCG
AGGCTCTTTCGGTTCCTTAGCGGCATATCCATCTTGACACACAGGAGCGAAGTGTGTGTC
AGCTTTCCCTCTGGGCACCTGGCCGCCCCTGCCTTCTCCCTCCAGCCCGTAGCCGGAATA
GGGTGTTCTGTGTTCTGGACAGTTGCCAGTGTTCTCCCTTTTTTTCACAGCACTTTGCTT
ATTTTTTTTTTTTTTAATAGTCCTTTATAGAGCTCAGTCAGGAAGGGGATTGGGGCACAA
AGCCAAGCCCCCGGCACTGGGAGAGGCCGGGCCACAGCTGCTGCTCCCCTAGGCCTAAGG
CTGTAAGCAAGAGGCAGCTCTGGCCCTCAGCCAGCGTCCTACCCTGCCCAGCTCCAAGGA
CGAGCTCCGGGTACGGAGCACTGGGCCCCAGGCCCTTGTCTCTGGGGCTCTTGGATGGTC
AGTATCTGTGACTGAATAAAGTTCCATTTTGTGGCAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               159-358, - strand, RNAz p=0.655422
               

               
               568-766, - strand, RNAz p=0.967776

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-358, - strand, RNAz p=0.655422
               

               
               568-766, - strand, RNAz p=0.967776

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               687-826, - strand, RNAmicro p=0.92109

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               687-826, - strand, RNAmicro p=0.92109

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-815, gnl|bosTau2|chr19 (38104670-38103831)
               

               
               1-815, gnl|Hg17|chr17 (39623820-39624619)
               

               
               1-815, gnl|Mm7|chr11 (102397536-102398274)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-815, gnl|bosTau2|chr19 (38104670-38103831)
               

               
               1-815, gnl|Hg17|chr17 (39623820-39624619)
               

               
               1-815, gnl|Mm7|chr11 (102397536-102398274)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	159-358, - strand, RNAz p=0.655422
	568-766, - strand, RNAz p=0.967776

	1-815, gnl\|bosTau2\|chr19 (38104670-38103831)
	1-815, gnl\|Hg17\|chr17 (39623820-39624619)
	1-815, gnl\|Mm7\|chr11 (102397536-102398274)

	nms (0.213858)
	fcc (0.197785)
	fbs (0.175346)
	mcp (0.170648)
	lnt (0.142308)
	nmm (0.132802)
	med (0.116252)
	ecc (0.115035)
	cty (0.10408)