Non-Coding RNA Search

Ss1.1-Pig4-TMW8050K13.3

Sequence:


               
               GAAGCCCCTGGATAGTCACGCGTCCCGCATGACGCAGCTCAAGAAGCAAGCCGCCCTGTC
GGGCATCAATGGAGGCCTGGAGAGCACGAGCGAGGAGGTCATTTGGGTTAGGCGCGAAGA
CTTTGCCCCCTCCCGGAAGCTCAACACTGAGATCTGACGGTGTCTCGCGCCCCGGCTGAA
GAGTCTGTGTAGATACGTCTCCCGCCCCGCCCCCACGCCGCGCCCCGCCCGCGCCCCGCC
CCGCGCCCCGCCCACGCCCCGCCCCTCAAGGCAGGGCACTGGGGAGGATGTTCCTTAAAT
TTCGCAGTCTTGCACACACGGTTTTGGCAGCTGACTTTGTCCTGAAGCCATGTAGCCACT
CAACTTCATCCTTTCTAACCACATCAGAAAATTGTTCAAGAATCCCAACTGAGCGCAAGT
CCTTTCTTCTTGTACATTACCAAGGGCTTTTATTTATTCTCAACTAATCAGGGCCTCACG
AATTAAAAAAAAAAAAAGTTTTTTTCTATAGCACTGGAAAGCAAATCACCCCAGGAGTTG
AAGTACGTCCAACAGATTCGTTGAAAGGATAGCGCACAAAAAAATAATAAAGACTCTCTG
AAGTCAGTCCCATCTCCTAGTTGGGAAAACAAAGCAAAGCAACTGTACAGCTTGCACTTG
CAGTGTTCTCACTCCTTTCCCTCTTAAATGTCTGAGAATATCTGTGTATTTTAAGAATGT
GTGAGGAGAGGGTGGAGTTTTATGTTTTGATGAGCCTTCTTTTTTCTTTTTTTTTTTTTT
CTTCCTCTTCTGTTTCGGTCTATGGCTGGTCTGATTCAATGTCCGTGTTTGGAAGCTCTA
GTTTTGCAGAGAATTATAAAGATGCCAAACTCCTTGAAAGAGATCCAAATTTATCACCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCCCCTGGATAGTCACGCGTCCCGCATGACGCAGCTCAAGAAGCAAGCCGCCCTGTC
GGGCATCAATGGAGGCCTGGAGAGCACGAGCGAGGAGGTCATTTGGGTTAGGCGCGAAGA
CTTTGCCCCCTCCCGGAAGCTCAACACTGAGATCTGACGGTGTCTCGCGCCCCGGCTGAA
GAGTCTGTGTAGATACGTCTCCCGCCCCGCCCCCACGCCGCGCCCCGCCCGCGCCCCGCC
CCGCGCCCCGCCCACGCCCCGCCCCTCAAGGCAGGGCACTGGGGAGGATGTTCCTTAAAT
TTCGCAGTCTTGCACACACGGTTTTGGCAGCTGACTTTGTCCTGAAGCCATGTAGCCACT
CAACTTCATCCTTTCTAACCACATCAGAAAATTGTTCAAGAATCCCAACTGAGCGCAAGT
CCTTTCTTCTTGTACATTACCAAGGGCTTTTATTTATTCTCAACTAATCAGGGCCTCACG
AATTAAAAAAAAAAAAAGTTTTTTTCTATAGCACTGGAAAGCAAATCACCCCAGGAGTTG
AAGTACGTCCAACAGATTCGTTGAAAGGATAGCGCACAAAAAAATAATAAAGACTCTCTG
AAGTCAGTCCCATCTCCTAGTTGGGAAAACAAAGCAAAGCAACTGTACAGCTTGCACTTG
CAGTGTTCTCACTCCTTTCCCTCTTAAATGTCTGAGAATATCTGTGTATTTTAAGAATGT
GTGAGGAGAGGGTGGAGTTTTATGTTTTGATGAGCCTTCTTTTTTCTTTTTTTTTTTTTT
CTTCCTCTTCTGTTTCGGTCTATGGCTGGTCTGATTCAATGTCCGTGTTTGGAAGCTCTA
GTTTTGCAGAGAATTATAAAGATGCCAAACTCCTTGAAAGAGATCCAAATTTATCACCGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-896, gnl|bosTau2|chr1 (3951763-3952643)
               

               
               1-896, gnl|Hg17|chr21 (31414713-31413888)
               

               
               1-896, gnl|Mm7|chr16 (89839205-89838358)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-896, gnl|bosTau2|chr1 (3951763-3952643)
               

               
               1-896, gnl|Hg17|chr21 (31414713-31413888)
               

               
               1-896, gnl|Mm7|chr16 (89839205-89838358)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               nep (0.183925)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1-896, gnl\|bosTau2\|chr1 (3951763-3952643)
	1-896, gnl\|Hg17\|chr21 (31414713-31413888)
	1-896, gnl\|Mm7\|chr16 (89839205-89838358)

	nep (0.183925)
	clu (0.119646)
	pgl (0.118483)
	med (0.116252)
	jca (0.11396)