Ss1.1-Pig4-TMW8050K15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCAAGCGGCTGCCCTGGGGATGGGATTATTCAGGCTCCTCCAACCTCGGAGAGCTGAA GCTCCTGCTGGAGGAGGCGGTCATGCTGCGACGCCTCAAGTGTGACGTCCTTTCCCAGCT CCCAGCCAAACAGCGCAAGATGGTGGTGGTTGCTCCGGGCCAGATGAGTGCCAGGTCTAG AGCCGCCCTGGAATCAGCAAAGGGGGAGATGACCACCAAGAACAAAACCAAACTGCAGCA GAAAGAAGCCCTCATTCTCTTCTTCAACAGAACAGCGGAGGCTAAAATGCAGTTGGCGGG CATCCTGATCACTTGTAACTTTAGGGTAGTCAGAAACGGGTACATGTAACTACTTATCAA TATGTTGAGTGTATGTTTTGTAGCCACTCCAAAAATTAGGTGTAATCCGCAGCACATCCG CATCGACGGATCCACCTCCTCAGCTGACCGTGAGGACCGGTGCCAGCGGTTCCAGCTGTC CAAGGGGCACGCCGTGGCCGTGCTGTCCATCACCGCCGCCAACATGGGCCTCACCCTCTC CTCGGCTGATCTGGTGGTGTTCGCAGAGCTGTTCTGGAACCCAGGGGTGCTGATGCAGGC TGAGGACCGGGTGCACCGCATCGGACAGTCCAACTCCGTGGGCATCCACTACCTGGTGGC GAGAGGCACAGCTGACGACTACCTTTGGCCCCTGATTCAAGAGAAGATTAAAGTTCTGGG TGAAGCTGGGCTTTCTGAGACCAATTTTTCAGAAATGACAGAAGCCAGTCTTTCTCTGAT GAAGGACCCAAAGCAGCAGGAGATCTATGACTTTTTCCAAAAGTCCTTTGAGGAAGACGG AAGCGATATGGAGCTGCTGGCGGCAGCAGAGTCCTTTGACCCAGGAAGTAGTTCCCAGGA CACAGGAGACCCACTGGACGAAAGCACATTGATGGGCAGTCCACAGAAGAAGAGGAGATT TGAATTTTTTGATAACTGGGACAGTTTTACCTCTCCTTTGTAAGAGGGGCAAAAAAATAT TAAAAATCATGGAGTTCATTAAAATAAAAGAAGACATTTTGCCCCTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCAAGCGGCTGCCCTGGGGATGGGATTATTCAGGCTCCTCCAACCTCGGAGAGCTGAA GCTCCTGCTGGAGGAGGCGGTCATGCTGCGACGCCTCAAGTGTGACGTCCTTTCCCAGCT CCCAGCCAAACAGCGCAAGATGGTGGTGGTTGCTCCGGGCCAGATGAGTGCCAGGTCTAG AGCCGCCCTGGAATCAGCAAAGGGGGAGATGACCACCAAGAACAAAACCAAACTGCAGCA GAAAGAAGCCCTCATTCTCTTCTTCAACAGAACAGCGGAGGCTAAAATGCAGTTGGCGGG CATCCTGATCACTTGTAACTTTAGGGTAGTCAGAAACGGGTACATGTAACTACTTATCAA TATGTTGAGTGTATGTTTTGTAGCCACTCCAAAAATTAGGTGTAATCCGCAGCACATCCG CATCGACGGATCCACCTCCTCAGCTGACCGTGAGGACCGGTGCCAGCGGTTCCAGCTGTC CAAGGGGCACGCCGTGGCCGTGCTGTCCATCACCGCCGCCAACATGGGCCTCACCCTCTC CTCGGCTGATCTGGTGGTGTTCGCAGAGCTGTTCTGGAACCCAGGGGTGCTGATGCAGGC TGAGGACCGGGTGCACCGCATCGGACAGTCCAACTCCGTGGGCATCCACTACCTGGTGGC GAGAGGCACAGCTGACGACTACCTTTGGCCCCTGATTCAAGAGAAGATTAAAGTTCTGGG TGAAGCTGGGCTTTCTGAGACCAATTTTTCAGAAATGACAGAAGCCAGTCTTTCTCTGAT GAAGGACCCAAAGCAGCAGGAGATCTATGACTTTTTCCAAAAGTCCTTTGAGGAAGACGG AAGCGATATGGAGCTGCTGGCGGCAGCAGAGTCCTTTGACCCAGGAAGTAGTTCCCAGGA CACAGGAGACCCACTGGACGAAAGCACATTGATGGGCAGTCCACAGAAGAAGAGGAGATT TGAATTTTTTGATAACTGGGACAGTTTTACCTCTCCTTTGTAAGAGGGGCAAAAAAATAT TAAAAATCATGGAGTTCATTAAAATAAAAGAAGACATTTTGCCCCTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 803-901, - strand, RNAz p=0.983572 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 803-901, - strand, RNAz p=0.983572 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 10-228, gnl|bosTau2|chr2 (59105638-59105856) | |
| 10-228, gnl|canFam2|chr37 (26399809-26400058) | |
| 10-228, gnl|danRer3|chrUn (75664344-75664592) | |
| 10-228, gnl|dasNov1|scaffold_7480 (46176-46425) | |
| 10-228, gnl|echTel1|scaffold_279897 (80588-80830) | |
| 10-228, gnl|fr1|chrUn (101345906-101346146) | |
| 10-228, gnl|galGal2|chr7 (24051907-24051664) | |
| 10-228, gnl|hg17|chr2 (217141053-217141301) | |
| 10-228, gnl|Hg17|chr2 (217141074-217141292) | |
| 10-228, gnl|loxAfr1|scaffold_893 (106102-106344) | |
| 10-228, gnl|mm7|chr1 (72854637-72854873) | |
| 10-228, gnl|Mm7|chr1 (72854649-72854864) | |
| 10-228, gnl|monDom2|scaffold_39 (4636416-4636167) | |
| 10-228, gnl|panTro1|chr13 (107316249-107316497) | |
| 10-228, gnl|rheMac2|chr12 (80265691-80265939) | |
| 10-228, gnl|rn3|chr9 (71957942-71958174) | |
| 10-228, gnl|tetNig1|chr2 (12625231-12624972) | |
| 10-228, gnl|xenTro1|scaffold_633 (8538-8310) | |
| 308-408, gnl|bosTau2|chr2 (59122772-59122871) | |
| 308-408, gnl|Hg17|chr2 (217172263-217172366) | |
| 409-589, gnl|bosTau2|chr2 (59117788-59117968) | |
| 409-589, gnl|canFam2|chr37 (26413193-26413420) | |
| 409-589, gnl|danRer3|chrUn (75671083-75671295) | |
| 409-589, gnl|echTel1|scaffold_277073 (10014-9800) | |
| 409-589, gnl|fr1|chrUn (101347227-101347440) | |
| 409-589, gnl|galGal2|chr7 (24047877-24047656) | |
| 409-589, gnl|hg17|chr2 (217165478-217165705) | |
| 409-589, gnl|Hg17|chr2 (217165503-217165683) | |
| 409-589, gnl|loxAfr1|scaffold_893 (121528-121756) | |
| 409-589, gnl|mm7|chr1 (72868285-72868505) | |
| 409-589, gnl|Mm7|chr1 (72868308-72868488) | |
| 409-589, gnl|monDom2|scaffold_39 (4627582-4627368) | |
| 409-589, gnl|oryCun1|scaffold_183857 (10182-9952) | |
| 409-589, gnl|panTro1|chr13 (107373046-107373273) | |
| 409-589, gnl|rheMac2|chr12 (80284764-80284991) | |
| 409-589, gnl|rn3|chr9 (71969658-71969880) | |
| 409-589, gnl|tetNig1|chr2 (12624016-12623821) | |
| 409-589, gnl|xenTro1|scaffold_633 (6294-6079) | |
| 769-1060, gnl|bosTau2|chr2 (59123202-59123489) | |
| 769-1060, gnl|Hg17|chr2 (217172946-217173273) | |
| 769-1060, gnl|Mm7|chr1 (72874642-72874963) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-228, gnl|bosTau2|chr2 (59105638-59105856) | |
| 10-228, gnl|canFam2|chr37 (26399809-26400058) | |
| 10-228, gnl|danRer3|chrUn (75664344-75664592) | |
| 10-228, gnl|dasNov1|scaffold_7480 (46176-46425) | |
| 10-228, gnl|echTel1|scaffold_279897 (80588-80830) | |
| 10-228, gnl|fr1|chrUn (101345906-101346146) | |
| 10-228, gnl|galGal2|chr7 (24051907-24051664) | |
| 10-228, gnl|hg17|chr2 (217141053-217141301) | |
| 10-228, gnl|Hg17|chr2 (217141074-217141292) | |
| 10-228, gnl|loxAfr1|scaffold_893 (106102-106344) | |
| 10-228, gnl|mm7|chr1 (72854637-72854873) | |
| 10-228, gnl|Mm7|chr1 (72854649-72854864) | |
| 10-228, gnl|monDom2|scaffold_39 (4636416-4636167) | |
| 10-228, gnl|panTro1|chr13 (107316249-107316497) | |
| 10-228, gnl|rheMac2|chr12 (80265691-80265939) | |
| 10-228, gnl|rn3|chr9 (71957942-71958174) | |
| 10-228, gnl|tetNig1|chr2 (12625231-12624972) | |
| 10-228, gnl|xenTro1|scaffold_633 (8538-8310) | |
| 308-408, gnl|bosTau2|chr2 (59122772-59122871) | |
| 308-408, gnl|Hg17|chr2 (217172263-217172366) | |
| 409-589, gnl|bosTau2|chr2 (59117788-59117968) | |
| 409-589, gnl|canFam2|chr37 (26413193-26413420) | |
| 409-589, gnl|danRer3|chrUn (75671083-75671295) | |
| 409-589, gnl|echTel1|scaffold_277073 (10014-9800) | |
| 409-589, gnl|fr1|chrUn (101347227-101347440) | |
| 409-589, gnl|galGal2|chr7 (24047877-24047656) | |
| 409-589, gnl|hg17|chr2 (217165478-217165705) | |
| 409-589, gnl|Hg17|chr2 (217165503-217165683) | |
| 409-589, gnl|loxAfr1|scaffold_893 (121528-121756) | |
| 409-589, gnl|mm7|chr1 (72868285-72868505) | |
| 409-589, gnl|Mm7|chr1 (72868308-72868488) | |
| 409-589, gnl|monDom2|scaffold_39 (4627582-4627368) | |
| 409-589, gnl|oryCun1|scaffold_183857 (10182-9952) | |
| 409-589, gnl|panTro1|chr13 (107373046-107373273) | |
| 409-589, gnl|rheMac2|chr12 (80284764-80284991) | |
| 409-589, gnl|rn3|chr9 (71969658-71969880) | |
| 409-589, gnl|tetNig1|chr2 (12624016-12623821) | |
| 409-589, gnl|xenTro1|scaffold_633 (6294-6079) | |
| 769-1060, gnl|bosTau2|chr2 (59123202-59123489) | |
| 769-1060, gnl|Hg17|chr2 (217172946-217173273) | |
| 769-1060, gnl|Mm7|chr1 (72874642-72874963) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ton (0.351) | |
| fce (0.271592) | |
| fhi (0.169578) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.351) | |
| fce (0.271592) | |
| fhi (0.169578) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| cty (0.10408) |