Non-Coding RNA Search

Ss1.1-Pig4-TMW8050K17.3

Sequence:


               
               TTTTTTTTTTTTTTTTTGGTCTGTTTGAGATGCAGATTGTGTCTTGAAAATGATGATTAT
ATATGCAAAGTCTGCCCTGCCCTCTCCCCCTTCCAAGTTTCCCCACGAAAAGGTCACACA
GTGAGGCTTCCTGTTGGGAGCAGAGGAGCTGAGTTGGCTTATAGAGCCCCTGGGGCTGTA
ATGTGAAGGGGAGGAGACTGAAATTCATGTCTTATCTCTGTTCTGTTAATACAATGCGAG
TTTGTGGGTTTTTAAAAATTCTGTTTCTCAGTGGAGGAGTAGGTGACTGTCTGGACTGTC
TTTATTTTGGGGGGGTTGGAACTTGTGGCTTTAAAAAAAAAATCACTTTTGAGTAGGATG
TATATTTTTGTTGGTTTTTTTCATTTGTTTGTTTATTTTTTTAGAATCCTCCACAGCAAC
ATGCGAGACCATGGAGTTAAACCCAGAGACCTTTATCAATTAATTGTACTGTTTGTGAAT
TTGTATAAATAATAACAAAGATCCTCTTAAAACGTTTATATTCTTACAGTAAAGGTTAAA
CTGATATTTATATAATAAAAGAGGAAATATGAAGTATGTTTTTGAAAAAAAAAAAAAAAA
AAAAAAAGCCTTGTATCTGTGAATTCTTTTTAAGGCAATGTGTGTTTGGGTCCACGCCAA
AACAGGAGGTGCTGTTCCTGTCTCTAAAGTCAAAGTATAAGGTGTAAGTTCGGTGCATCC
TAAGTGGTGTGGGTAAGCTCGTGGTGAAAAATTTATTCTGTGTAAGGTTTACTACTGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTGGTCTGTTTGAGATGCAGATTGTGTCTTGAAAATGATGATTAT
ATATGCAAAGTCTGCCCTGCCCTCTCCCCCTTCCAAGTTTCCCCACGAAAAGGTCACACA
GTGAGGCTTCCTGTTGGGAGCAGAGGAGCTGAGTTGGCTTATAGAGCCCCTGGGGCTGTA
ATGTGAAGGGGAGGAGACTGAAATTCATGTCTTATCTCTGTTCTGTTAATACAATGCGAG
TTTGTGGGTTTTTAAAAATTCTGTTTCTCAGTGGAGGAGTAGGTGACTGTCTGGACTGTC
TTTATTTTGGGGGGGTTGGAACTTGTGGCTTTAAAAAAAAAATCACTTTTGAGTAGGATG
TATATTTTTGTTGGTTTTTTTCATTTGTTTGTTTATTTTTTTAGAATCCTCCACAGCAAC
ATGCGAGACCATGGAGTTAAACCCAGAGACCTTTATCAATTAATTGTACTGTTTGTGAAT
TTGTATAAATAATAACAAAGATCCTCTTAAAACGTTTATATTCTTACAGTAAAGGTTAAA
CTGATATTTATATAATAAAAGAGGAAATATGAAGTATGTTTTTGAAAAAAAAAAAAAAAA
AAAAAAAGCCTTGTATCTGTGAATTCTTTTTAAGGCAATGTGTGTTTGGGTCCACGCCAA
AACAGGAGGTGCTGTTCCTGTCTCTAAAGTCAAAGTATAAGGTGTAAGTTCGGTGCATCC
TAAGTGGTGTGGGTAAGCTCGTGGTGAAAAATTTATTCTGTGTAAGGTTTACTACTGACA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               3-780, gnl|bosTau2|chr5 (65212461-65213246)
               

               
               3-780, gnl|Hg17|chr12 (1571327-1570600)
               

               
               3-780, gnl|Mm7|chr6 (119507187-119507941)
               


               
               300-605, gnl|bosTau2|chr4 (38239331-38239649)
               

               
               300-605, gnl|Mm7|chr6 (119507481-119507772)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-780, gnl|bosTau2|chr5 (65212461-65213246)
               

               
               3-780, gnl|Hg17|chr12 (1571327-1570600)
               

               
               3-780, gnl|Mm7|chr6 (119507187-119507941)
               


               
               300-605, gnl|bosTau2|chr4 (38239331-38239649)
               

               
               300-605, gnl|Mm7|chr6 (119507481-119507772)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               fat (0.294855)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	3-780, gnl\|bosTau2\|chr5 (65212461-65213246)
	3-780, gnl\|Hg17\|chr12 (1571327-1570600)
	3-780, gnl\|Mm7\|chr6 (119507187-119507941)

	300-605, gnl\|bosTau2\|chr4 (38239331-38239649)
	300-605, gnl\|Mm7\|chr6 (119507481-119507772)

	fat (0.294855)
	sin (0.174948)
	rec (0.17307)
	cut (0.169924)
	mga (0.160205)
	isp (0.150376)
	csk (0.140746)
	hlv (0.139256)
	pgl (0.118483)
	med (0.116252)