Non-Coding RNA Search

Ss1.1-Pig4-TMW8050K20.3.5

Sequence:


               
               ATCTTTTCTGCTGCCCTGAATGTGACCCAAGGATGAGCAGTCAGTGCCTCCATCAAAATG
GGGAAATCTTATACAACAGCGGTGACACCTGGGTCCAGAATTGCCAGCAGTGCCGCTGCT
TGCAAGGGGAAGTTGACTGTTGGCCCCTGCCATGCCCAGAGGTGGAGTGTGAATTCAGTG
TCCTCCCAGAGAATGAGTGCTGCCCACGCTGTGTCACCGACCCTTGCCAAGCTGACACCA
TCCGCAATGACATCACCAAAACTTGCCTGGACGAGATGAATGTGGTTCGCTTCACTGGGT
CCTCTTGGATCAAACATGGTACTGAGTGTACTCTCTGCCAGTGCAAGAATGGCCACATCT
GTTGCTCAGTGGATCCACAGTGCCTTCAGGAACTGTGAAGTTAACTCTCTCACTGGAAAT
TTCTGTTTAAAGAATGTTCTTTCATTAAAAAGACCAAAAAAAAAAAAAAAGTTGAAACTT
AAAGTGGATGATTTGGGGGCAGCTAAGTGCAGCATTGTTAATAGCTGAGTGAACTTTCAA
TTACGGAATTTGTGGAGCTTGAGAAAAATCACAAAAGGAAAATTCTTGGGGAAAAACTAG
ACCAGAATTCTGCCTCTCCTGCATCTGACATCAGCATGTAGAAGGGTGGGCGTGGAATAC
ACCATGACATCGTGACCCCTGGACGTAGAGCCTGAGCTGATGGGAGCTTTGAAAGCCTCG
AGCTTCACTGGTGCAGAAAATGTTCCTCTAGATCAGAGTCTTCTTGAATCAGTTCAGTTC
TTCACTGCAAAAAAAGAAAAGAAAATGTAAGGCAGTGAATGAATTATATTTTCAGAAGCA
AAGCAAAGATGCTATAACATGTTATATGTACAGTATACACTCTGAAAAGAAATCTGAAAC
AAGTTATTGTAATGATCAAAATAATGCACAGGCATGGTTACTTAATATTTTCTAACAAGA
AAAGTCATCCCTATTTCATTGTTTTACTGCACTTAATATTATTTGGTTGAATTTGTTCAG
TATAAGCTTGTTCTTGTGTAAAATTAAATAAATATTTCTCTTACCTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTTTTCTGCTGCCCTGAATGTGACCCAAGGATGAGCAGTCAGTGCCTCCATCAAAATG
GGGAAATCTTATACAACAGCGGTGACACCTGGGTCCAGAATTGCCAGCAGTGCCGCTGCT
TGCAAGGGGAAGTTGACTGTTGGCCCCTGCCATGCCCAGAGGTGGAGTGTGAATTCAGTG
TCCTCCCAGAGAATGAGTGCTGCCCACGCTGTGTCACCGACCCTTGCCAAGCTGACACCA
TCCGCAATGACATCACCAAAACTTGCCTGGACGAGATGAATGTGGTTCGCTTCACTGGGT
CCTCTTGGATCAAACATGGTACTGAGTGTACTCTCTGCCAGTGCAAGAATGGCCACATCT
GTTGCTCAGTGGATCCACAGTGCCTTCAGGAACTGTGAAGTTAACTCTCTCACTGGAAAT
TTCTGTTTAAAGAATGTTCTTTCATTAAAAAGACCAAAAAAAAAAAAAAAGTTGAAACTT
AAAGTGGATGATTTGGGGGCAGCTAAGTGCAGCATTGTTAATAGCTGAGTGAACTTTCAA
TTACGGAATTTGTGGAGCTTGAGAAAAATCACAAAAGGAAAATTCTTGGGGAAAAACTAG
ACCAGAATTCTGCCTCTCCTGCATCTGACATCAGCATGTAGAAGGGTGGGCGTGGAATAC
ACCATGACATCGTGACCCCTGGACGTAGAGCCTGAGCTGATGGGAGCTTTGAAAGCCTCG
AGCTTCACTGGTGCAGAAAATGTTCCTCTAGATCAGAGTCTTCTTGAATCAGTTCAGTTC
TTCACTGCAAAAAAAGAAAAGAAAATGTAAGGCAGTGAATGAATTATATTTTCAGAAGCA
AAGCAAAGATGCTATAACATGTTATATGTACAGTATACACTCTGAAAAGAAATCTGAAAC
AAGTTATTGTAATGATCAAAATAATGCACAGGCATGGTTACTTAATATTTTCTAACAAGA
AAAGTCATCCCTATTTCATTGTTTTACTGCACTTAATATTATTTGGTTGAATTTGTTCAG
TATAAGCTTGTTCTTGTGTAAAATTAAATAAATATTTCTCTTACCTTAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               122-347, gnl|bosTau2|chr25 (41075888-41076113)
               

               
               122-347, gnl|Hg17|chr12 (43200280-43200055)
               

               
               122-347, gnl|Mm7|chr15 (95231083-95230858)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-347, gnl|bosTau2|chr25 (41075888-41076113)
               

               
               122-347, gnl|Hg17|chr12 (43200280-43200055)
               

               
               122-347, gnl|Mm7|chr15 (95231083-95230858)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               fco (1.25766)
               

               
               cbe (1.19617)
               

               
               ova (0.645661)
               

               
               amn (0.417711)
               

               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.25766)
               

               
               cbe (1.19617)
               

               
               ova (0.645661)
               

               
               amn (0.417711)
               

               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	122-347, gnl\|bosTau2\|chr25 (41075888-41076113)
	122-347, gnl\|Hg17\|chr12 (43200280-43200055)
	122-347, gnl\|Mm7\|chr15 (95231083-95230858)

	fco (1.25766)
	cbe (1.19617)
	ova (0.645661)
	amn (0.417711)
	ecc (0.345105)
	fce (0.271592)
	ret (0.257467)
	fbs (0.175346)
	rec (0.17307)
	spl (0.143184)
	hyp (0.142837)
	cbr (0.127975)
	sug (0.127291)
	spc (0.113366)
	eje (0.0988338)