Non-Coding RNA Search

Ss1.1-Pig4-TMW8050K22.5

Sequence:


               
               CTGAAATTGGCAAATCAAATTTAACCCAATTAATAGTGTGTGTGTGGCAGGAGTCATGTC
CCTCCACTCCTTTGTACAAATGAAAATTACTCTTAATTCCTTCAGATTTGTAATAGCCCC
TTACTCTGGTTTCAGGGTGACATTTGGGAAGGATTCTGTTTAAAATTAATGGAGTGGCAC
ATTTTGCAGCCTTTTTGCTTGATTGCATGTAATGGACGTGCCCTATATTTTCCTGCAAAG
TAAGTCCTCGATTCATTATCATTAGGCAAATGTACAATATACCCAGGCACCGCAGAGCGC
TGGGCGCCGGCCCATGTGAGCAGGGCTTGGGAAGTAGGGCTCTTCACCAGGGACCCTTGA
GCTTTAAAGAAAGGAACTCCTTTTCACCCTCTAATTGATCATTTAGACCATTTCTGGCTA
AGTCTGCCCACATGCAATTACTGGCTAATTCAGGCGAGGAAAAATGTAAGTTATTTAGGC
CCAAGCGGAGTGGTTTCCTTGCGGGCTTGTGGTTACATGGATCCCCTCTACATGAACCCA
AGTTCCGAATACAGAGCTCTCGTTGGCCCAGCCTGCGGGTCCTGGAGGGATAGGAAAGGG
CTAGAATGGGGGTGACTAAGCGGACAAGAAGCTTGGGACAAATGCTTGCACACTTAGCAT
ACAGAGGATTACTCTCAGACCGAGGGATGGGCCTGTGGCTATTCACACTTAGACTGCTAA
GTTGACCGAGGCTTTGGGAGGACTAATAACTTAGAGTGATATTGTATCTGCAATACAGAA
TTTTCCTAAGTATGGCAGGCGGACACCAGCCTGGGTCCCTGCCTCGCAAAGTCTGTGCCT
GCTTTGTCACTACTTGAGGCCAGATGGCACGAAGCCCATCTCTGGTTTGAGGAAGTCCTT
GTGATCTCTGTCTATGCTACCCGGAGGGAGGCCTCCCATTGTCTCTAAAACATTCCTTCT
AGCTTCTCCTCACTTCTTACTCTATGGTCTACCTGCAGGAACTTAGAAGCCACACCGTTT
AGAGAGACTTCCTATGTCTGAGGAGGTTTTGCTCCAAGAGAGAATTATTCAGCATCATGA
GCATTTAAGATATAAAGAAAATGTACTCTCTTGTGTCAGTTTAAAAGAATACAATTCTTT
TTTACCTAATTAGTGAAATATTTCATTTGTCTTTAGGAAACACTAAATACTGTGATACTT
CTGTTGGCTCTCTTTGAAATTCCTGATAGCAAACTGACATAAATAATTGCTTTGTCTTCT
TGAGCAAATACTAAAGTGAGATGAAATACGAGGAATGCATTCATTTAAACATGCTTTGCT
GTATGAACTTTGTCTCCTTTGTGTGTGTATGTGTGTGTGCCTTATATTCAAGCTGCAAAT
GGACAGTGGGCAAATGGCCTTATTAAAAATACTCCTTTTTTGTATTTTACGTATATGCTG
TATAAAAACACATCAGAACACTTGGAAAGGTTTTTTTTTTTTTTTTTAAGAACAGGTCTA
ATTTATCAGAAAATTGTTTTTTTGATACCATCTTGCCTTAGTCTAGAACCCCAGGGCCTA
GGCCTGGTTTTATAGCCCTATCACCTCACTTAGAGGTTTTCCTTTAGATGCTGGAAGCTC
TTGCTTAATATATGACTTTGTTTTTGAAGCAGGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAAATTGGCAAATCAAATTTAACCCAATTAATAGTGTGTGTGTGGCAGGAGTCATGTC
CCTCCACTCCTTTGTACAAATGAAAATTACTCTTAATTCCTTCAGATTTGTAATAGCCCC
TTACTCTGGTTTCAGGGTGACATTTGGGAAGGATTCTGTTTAAAATTAATGGAGTGGCAC
ATTTTGCAGCCTTTTTGCTTGATTGCATGTAATGGACGTGCCCTATATTTTCCTGCAAAG
TAAGTCCTCGATTCATTATCATTAGGCAAATGTACAATATACCCAGGCACCGCAGAGCGC
TGGGCGCCGGCCCATGTGAGCAGGGCTTGGGAAGTAGGGCTCTTCACCAGGGACCCTTGA
GCTTTAAAGAAAGGAACTCCTTTTCACCCTCTAATTGATCATTTAGACCATTTCTGGCTA
AGTCTGCCCACATGCAATTACTGGCTAATTCAGGCGAGGAAAAATGTAAGTTATTTAGGC
CCAAGCGGAGTGGTTTCCTTGCGGGCTTGTGGTTACATGGATCCCCTCTACATGAACCCA
AGTTCCGAATACAGAGCTCTCGTTGGCCCAGCCTGCGGGTCCTGGAGGGATAGGAAAGGG
CTAGAATGGGGGTGACTAAGCGGACAAGAAGCTTGGGACAAATGCTTGCACACTTAGCAT
ACAGAGGATTACTCTCAGACCGAGGGATGGGCCTGTGGCTATTCACACTTAGACTGCTAA
GTTGACCGAGGCTTTGGGAGGACTAATAACTTAGAGTGATATTGTATCTGCAATACAGAA
TTTTCCTAAGTATGGCAGGCGGACACCAGCCTGGGTCCCTGCCTCGCAAAGTCTGTGCCT
GCTTTGTCACTACTTGAGGCCAGATGGCACGAAGCCCATCTCTGGTTTGAGGAAGTCCTT
GTGATCTCTGTCTATGCTACCCGGAGGGAGGCCTCCCATTGTCTCTAAAACATTCCTTCT
AGCTTCTCCTCACTTCTTACTCTATGGTCTACCTGCAGGAACTTAGAAGCCACACCGTTT
AGAGAGACTTCCTATGTCTGAGGAGGTTTTGCTCCAAGAGAGAATTATTCAGCATCATGA
GCATTTAAGATATAAAGAAAATGTACTCTCTTGTGTCAGTTTAAAAGAATACAATTCTTT
TTTACCTAATTAGTGAAATATTTCATTTGTCTTTAGGAAACACTAAATACTGTGATACTT
CTGTTGGCTCTCTTTGAAATTCCTGATAGCAAACTGACATAAATAATTGCTTTGTCTTCT
TGAGCAAATACTAAAGTGAGATGAAATACGAGGAATGCATTCATTTAAACATGCTTTGCT
GTATGAACTTTGTCTCCTTTGTGTGTGTATGTGTGTGTGCCTTATATTCAAGCTGCAAAT
GGACAGTGGGCAAATGGCCTTATTAAAAATACTCCTTTTTTGTATTTTACGTATATGCTG
TATAAAAACACATCAGAACACTTGGAAAGGTTTTTTTTTTTTTTTTTAAGAACAGGTCTA
ATTTATCAGAAAATTGTTTTTTTGATACCATCTTGCCTTAGTCTAGAACCCCAGGGCCTA
GGCCTGGTTTTATAGCCCTATCACCTCACTTAGAGGTTTTCCTTTAGATGCTGGAAGCTC
TTGCTTAATATATGACTTTGTTTTTGAAGCAGGGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1464-1619, - strand, RNAz p=0.980602

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1464-1619, - strand, RNAz p=0.980602

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1656, gnl|bosTau2|chr15 (24054145-24055777)
               

               
               1-1656, gnl|Hg17|chr11 (12506836-12508465)
               

               
               1-1656, gnl|Mm7|chr7 (108505284-108507215)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1656, gnl|bosTau2|chr15 (24054145-24055777)
               

               
               1-1656, gnl|Hg17|chr11 (12506836-12508465)
               

               
               1-1656, gnl|Mm7|chr7 (108505284-108507215)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

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               aor (0.390549)
               

               
               elu (0.385356)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               mcp (0.341297)
               

               
               cut (0.339847)
               

               
               csp (0.322373)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               cga (0.279096)
               

               
               lyg (0.266205)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               mcp (0.341297)
               

               
               cut (0.339847)
               

               
               csp (0.322373)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               cga (0.279096)
               

               
               lyg (0.266205)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	1-1656, gnl\|bosTau2\|chr15 (24054145-24055777)
	1-1656, gnl\|Hg17\|chr11 (12506836-12508465)
	1-1656, gnl\|Mm7\|chr7 (108505284-108507215)

	aor (0.390549)
	elu (0.385356)
	bla (0.373042)
	gul (0.355177)
	mcp (0.341297)
	cut (0.339847)
	csp (0.322373)
	fat (0.294855)
	spl (0.286369)
	cga (0.279096)
	lyg (0.266205)
	cki (0.165235)
	mga (0.160205)
	lun (0.150489)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	jca (0.11396)