Non-Coding RNA Search

Ss1.1-Pig4-TMW8050L05.5

Sequence:


               
               GACAGATCAGAGTGAGAGGCGCTGGCAATGGACTAGGAAGCTCGGCTGCCGCTGCTACTG
CTCCCCCCTGGGCTCCGGCGAGAGCCTTTCCCTGTCAAGCAAGAGGGGTGAGGATCATAT
TTTTATTTTGGAAACTAAAAAGTGCTCCCAGGGTCGGTGATTATTAAGGGGAAATCCCTG
AATATACTCTCCAGCCAAGAAGGCAGGGCTGCCGGGGCTGCACAAGAAGAGGCAGCAGCC
TCCTACAGCACCACTACAGGCACTGCGAGGACATAACACCAGAGAGCAGCTCCTCTGCCC
TCCGAAACGACAACTTTCCTACCATCTTGGAGGCAGAGGAAAGGGGGGCCGGGGGGAAAA
GTGCACCCGCTCCCGATAAAGTACAAATTTCTACCTCTCATCTCTGGAAAAAGGTCCACA
CCGGCCGTCTACACCGGCGCCTGGGGGAAAAAAGCGGGCAAGAAACTGGGGGTGCTTGAG
AAACGTTTGCATTTGCACCAGGGGGAAAAATGTTTCTGCATCTTCTGATGGAAAGAAATC
TTTACAAGACACAGGTTTTCCGATCTAAGTTCTGGGTCTGGTGGTCAGTTTATAAATTTG
GACTTTAAGAGACTTCATAGCCACTTTATCTTTGCCTACTTACACATTTGTGTATAGAAA
ATATTTATGTCTCCTTATATTATATATAAGAATTTGTGTTATATAGCCTTCTCCAAACTG
AGATTGCTGGAAGACAATTGTAAAAGGATGTCTTTTGTCTCCTTTTCTCAAAGCAATGTA
AATAAAACCTATTGACAATCCAGAAAGGCAAGATAGAGCAGTTTATTTTTCACAGTGCAA
ATTAAGGCAGAGATCACTGGGGGGTTAAATACAACTTAAGTATAACTGACCACGTTTCTG
GAAAAAATCCTAATGCTGTTATGTTCTGCCCATGAAGAAAGGTTACTGTAAAACTGGAAA
TAGATTTTAAAGACAGCATTAGATTTTCTTAAAGAAAAATTGCTTATTTAGAATTATACC
AGGCATTTAATTTTTTTTTTATTTTGTTCCTTTAAGGTTCAGATCTTTGGTGCATTACAC
ATATTGCTGTCCACTTTTTGAGAAATATGTCAATTTTTGTTACATTTTTGTTAAGAGTTG
ACATGTTCAGAACTTCCAGTGTGCTGTCAAACTGTATAAAATACTTTTAATATTTTGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGATCAGAGTGAGAGGCGCTGGCAATGGACTAGGAAGCTCGGCTGCCGCTGCTACTG
CTCCCCCCTGGGCTCCGGCGAGAGCCTTTCCCTGTCAAGCAAGAGGGGTGAGGATCATAT
TTTTATTTTGGAAACTAAAAAGTGCTCCCAGGGTCGGTGATTATTAAGGGGAAATCCCTG
AATATACTCTCCAGCCAAGAAGGCAGGGCTGCCGGGGCTGCACAAGAAGAGGCAGCAGCC
TCCTACAGCACCACTACAGGCACTGCGAGGACATAACACCAGAGAGCAGCTCCTCTGCCC
TCCGAAACGACAACTTTCCTACCATCTTGGAGGCAGAGGAAAGGGGGGCCGGGGGGAAAA
GTGCACCCGCTCCCGATAAAGTACAAATTTCTACCTCTCATCTCTGGAAAAAGGTCCACA
CCGGCCGTCTACACCGGCGCCTGGGGGAAAAAAGCGGGCAAGAAACTGGGGGTGCTTGAG
AAACGTTTGCATTTGCACCAGGGGGAAAAATGTTTCTGCATCTTCTGATGGAAAGAAATC
TTTACAAGACACAGGTTTTCCGATCTAAGTTCTGGGTCTGGTGGTCAGTTTATAAATTTG
GACTTTAAGAGACTTCATAGCCACTTTATCTTTGCCTACTTACACATTTGTGTATAGAAA
ATATTTATGTCTCCTTATATTATATATAAGAATTTGTGTTATATAGCCTTCTCCAAACTG
AGATTGCTGGAAGACAATTGTAAAAGGATGTCTTTTGTCTCCTTTTCTCAAAGCAATGTA
AATAAAACCTATTGACAATCCAGAAAGGCAAGATAGAGCAGTTTATTTTTCACAGTGCAA
ATTAAGGCAGAGATCACTGGGGGGTTAAATACAACTTAAGTATAACTGACCACGTTTCTG
GAAAAAATCCTAATGCTGTTATGTTCTGCCCATGAAGAAAGGTTACTGTAAAACTGGAAA
TAGATTTTAAAGACAGCATTAGATTTTCTTAAAGAAAAATTGCTTATTTAGAATTATACC
AGGCATTTAATTTTTTTTTTATTTTGTTCCTTTAAGGTTCAGATCTTTGGTGCATTACAC
ATATTGCTGTCCACTTTTTGAGAAATATGTCAATTTTTGTTACATTTTTGTTAAGAGTTG
ACATGTTCAGAACTTCCAGTGTGCTGTCAAACTGTATAAAATACTTTTAATATTTTGCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               119-318, - strand, RNAz p=0.946237
               

               
               172-271, - strand, RNAz p=0.771035

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-318, - strand, RNAz p=0.946237
               

               
               172-271, - strand, RNAz p=0.771035

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_017759, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017759, -

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-562, gnl|bosTau2|chr2 (55089847-55089287)
               

               
               1-562, gnl|canFam2|chr37 (17648242-17648733)
               

               
               1-562, gnl|dasNov1|scaffold_105808 (1083-604)
               

               
               1-562, gnl|echTel1|scaffold_295028 (10513-10047)
               

               
               1-562, gnl|galGal2|chr7 (13487511-13487039)
               

               
               1-562, gnl|hg17|chr2 (206776058-206776522)
               

               
               1-562, gnl|Hg17|chr2 (206776182-206776742)
               

               
               1-562, gnl|loxAfr1|scaffold_81926 (1312-845)
               

               
               1-562, gnl|mm7|chr1 (63354950-63355439)
               

               
               1-562, gnl|Mm7|chr1 (63355108-63355630)
               

               
               1-562, gnl|monDom2|scaffold_39 (17349470-17348991)
               

               
               1-562, gnl|oryCun1|scaffold_200470 (184641-184175)
               

               
               1-562, gnl|panTro1|chr13 (96809797-96810260)
               

               
               1-562, gnl|rheMac2|chr12 (69977008-69977472)
               

               
               1-562, gnl|rn3|chr9 (61912655-61913137)
               

               
               1-562, gnl|xenTro1|scaffold_168 (1599048-1599555)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-562, gnl|bosTau2|chr2 (55089847-55089287)
               

               
               1-562, gnl|canFam2|chr37 (17648242-17648733)
               

               
               1-562, gnl|dasNov1|scaffold_105808 (1083-604)
               

               
               1-562, gnl|echTel1|scaffold_295028 (10513-10047)
               

               
               1-562, gnl|galGal2|chr7 (13487511-13487039)
               

               
               1-562, gnl|hg17|chr2 (206776058-206776522)
               

               
               1-562, gnl|Hg17|chr2 (206776182-206776742)
               

               
               1-562, gnl|loxAfr1|scaffold_81926 (1312-845)
               

               
               1-562, gnl|mm7|chr1 (63354950-63355439)
               

               
               1-562, gnl|Mm7|chr1 (63355108-63355630)
               

               
               1-562, gnl|monDom2|scaffold_39 (17349470-17348991)
               

               
               1-562, gnl|oryCun1|scaffold_200470 (184641-184175)
               

               
               1-562, gnl|panTro1|chr13 (96809797-96810260)
               

               
               1-562, gnl|rheMac2|chr12 (69977008-69977472)
               

               
               1-562, gnl|rn3|chr9 (61912655-61913137)
               

               
               1-562, gnl|xenTro1|scaffold_168 (1599048-1599555)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)

	119-318, - strand, RNAz p=0.946237
	172-271, - strand, RNAz p=0.771035

	1-562, gnl\|bosTau2\|chr2 (55089847-55089287)
	1-562, gnl\|canFam2\|chr37 (17648242-17648733)
	1-562, gnl\|dasNov1\|scaffold_105808 (1083-604)
	1-562, gnl\|echTel1\|scaffold_295028 (10513-10047)
	1-562, gnl\|galGal2\|chr7 (13487511-13487039)
	1-562, gnl\|hg17\|chr2 (206776058-206776522)
	1-562, gnl\|Hg17\|chr2 (206776182-206776742)
	1-562, gnl\|loxAfr1\|scaffold_81926 (1312-845)
	1-562, gnl\|mm7\|chr1 (63354950-63355439)
	1-562, gnl\|Mm7\|chr1 (63355108-63355630)
	1-562, gnl\|monDom2\|scaffold_39 (17349470-17348991)
	1-562, gnl\|oryCun1\|scaffold_200470 (184641-184175)
	1-562, gnl\|panTro1\|chr13 (96809797-96810260)
	1-562, gnl\|rheMac2\|chr12 (69977008-69977472)
	1-562, gnl\|rn3\|chr9 (61912655-61913137)
	1-562, gnl\|xenTro1\|scaffold_168 (1599048-1599555)