Ss1.1-Pig4-TMW8050L11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCTGGAGATGGTGGAGGAGTGCGAGCGGCGCCTGCAGCCCGGCTGCAGCAACCCCCTC ACCCTGGACGAGTGTGCCCGCATCTTCGAGACCCTGCAGGACAAGTACTACGAGGAGTAC AGGATGTCCGACCGTGTGGATCTGGCTGTGGCCATCGTCTACCCGCTGATGAAGGACTAC TTCAAGGAGTGGGACCCCCTCAAGGACTGTACTTACGGCACGGAGATCATCTCCAAGTGG AAAAGCCTCCTGGAGAATGACCAGCTCTTGTCCCACGGTGGGCAGGACCTCTCGGCAGAC GCCTTTCACAGGCTGATATGGGAAGTCTGGATGCCTTTCGTTCGAAATATCGTCACTCAG TGGCAACCAAGGAACTGTGACCCAATGGTGGACTTTCTGGATAGCTGGGTGCACATTATT CCCGTGTGGATCTTGGATAACATACTGGACCAGCTCGTCTTCCCCAAGCTGCAGAAGGAG GTGGAAAACTGGAACCCACTGACGGACACGGTTCCCATCCACTCCTGGATCCACCCGTGG CTGCCCCTCATGCAGGCGCGCCTGGAGCCGCTGTATTCCCCCATCCGCAGCAAGCTGGCC AGTGCCCTGCAGAAGTGGCACCCCAGCGACTCCTCTGCCAAGCTCATCCTCCAGCCCTGG AAAGACGTCTTCACCCCGGGCTCCTGGGAAGCATTCATGGTCAAGAACATAGTGCCCAAG CTGGGGATGTGCCTTGGGGAGCTGGTCATCAACCCCCACCAGCAGCACATGGATGCCTTT TATTGGGTCATCGACTGGGAAGGGATGATCTCTGTCTCCAGCCTGGTGGGGCTTCTTGAA AAGCACTTCTTCCCCAAGTGGCTTCAGGTGCTGTGCTCCTGGCTCAGTAACAGCCCAAAT TACGAGGAGATCACCAAGTGGTACCTGGGTTGGAAATCCATGTTCTCAGACCAAGTGCTG GCGCACCCATCTGTTAAGGACAAGTTTAACGAGGCACTGGATATCATGAACAGGGCAGTG TCCTCCAATGTCGGTGCCTACATGCAGCCTGGTGCGCGGGAGAACATCGCCTACCTCACC CACACGGAGCGGAGGAAGGACTTCCAGTACGAGGCCATGCAGGAGCGACGAGAGGCCGAG AACATGGCCCAGCGGGGCATTGGTGTGGCCGCCAGCTCCGTGCCCATGAACTTTAAAGAC CTGATTGAGACCAAGGCTGAGGAGCACAACATCGTCTTCATGCCTGTCATTGGGAAGCGA CACGAAGGCAAGCAGCTCTACACCTTCGGCCGCATCGTCATCTACATCGACCGGGGAGTG GTGTTCGTCCAGGGGGAGAAGACCTGGGTGCCCACCTCCCTGCAGAGCCTGATTGACATG GCCAAGTAGGCCACCCACCCAACACGGACATACTTGTGAATAAAATGCTATTTTAAATCT TAGCTGCCATAGTTCCTGTAACCTCCAGGATGGCTGCTTGTGCCTCAGCCACCAACAGAC ACGTTACAGGGTGTTCAAGTCAGTGGCTGAAGGCTCTTCTGTCTTATTCCTGATGATTTC AAGATCCTCACAGTCCTCGTAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCTGGAGATGGTGGAGGAGTGCGAGCGGCGCCTGCAGCCCGGCTGCAGCAACCCCCTC ACCCTGGACGAGTGTGCCCGCATCTTCGAGACCCTGCAGGACAAGTACTACGAGGAGTAC AGGATGTCCGACCGTGTGGATCTGGCTGTGGCCATCGTCTACCCGCTGATGAAGGACTAC TTCAAGGAGTGGGACCCCCTCAAGGACTGTACTTACGGCACGGAGATCATCTCCAAGTGG AAAAGCCTCCTGGAGAATGACCAGCTCTTGTCCCACGGTGGGCAGGACCTCTCGGCAGAC GCCTTTCACAGGCTGATATGGGAAGTCTGGATGCCTTTCGTTCGAAATATCGTCACTCAG TGGCAACCAAGGAACTGTGACCCAATGGTGGACTTTCTGGATAGCTGGGTGCACATTATT CCCGTGTGGATCTTGGATAACATACTGGACCAGCTCGTCTTCCCCAAGCTGCAGAAGGAG GTGGAAAACTGGAACCCACTGACGGACACGGTTCCCATCCACTCCTGGATCCACCCGTGG CTGCCCCTCATGCAGGCGCGCCTGGAGCCGCTGTATTCCCCCATCCGCAGCAAGCTGGCC AGTGCCCTGCAGAAGTGGCACCCCAGCGACTCCTCTGCCAAGCTCATCCTCCAGCCCTGG AAAGACGTCTTCACCCCGGGCTCCTGGGAAGCATTCATGGTCAAGAACATAGTGCCCAAG CTGGGGATGTGCCTTGGGGAGCTGGTCATCAACCCCCACCAGCAGCACATGGATGCCTTT TATTGGGTCATCGACTGGGAAGGGATGATCTCTGTCTCCAGCCTGGTGGGGCTTCTTGAA AAGCACTTCTTCCCCAAGTGGCTTCAGGTGCTGTGCTCCTGGCTCAGTAACAGCCCAAAT TACGAGGAGATCACCAAGTGGTACCTGGGTTGGAAATCCATGTTCTCAGACCAAGTGCTG GCGCACCCATCTGTTAAGGACAAGTTTAACGAGGCACTGGATATCATGAACAGGGCAGTG TCCTCCAATGTCGGTGCCTACATGCAGCCTGGTGCGCGGGAGAACATCGCCTACCTCACC CACACGGAGCGGAGGAAGGACTTCCAGTACGAGGCCATGCAGGAGCGACGAGAGGCCGAG AACATGGCCCAGCGGGGCATTGGTGTGGCCGCCAGCTCCGTGCCCATGAACTTTAAAGAC CTGATTGAGACCAAGGCTGAGGAGCACAACATCGTCTTCATGCCTGTCATTGGGAAGCGA CACGAAGGCAAGCAGCTCTACACCTTCGGCCGCATCGTCATCTACATCGACCGGGGAGTG GTGTTCGTCCAGGGGGAGAAGACCTGGGTGCCCACCTCCCTGCAGAGCCTGATTGACATG GCCAAGTAGGCCACCCACCCAACACGGACATACTTGTGAATAAAATGCTATTTTAAATCT TAGCTGCCATAGTTCCTGTAACCTCCAGGATGGCTGCTTGTGCCTCAGCCACCAACAGAC ACGTTACAGGGTGTTCAAGTCAGTGGCTGAAGGCTCTTCTGTCTTATTCCTGATGATTTC AAGATCCTCACAGTCCTCGTAATC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-205, gnl|bosTau2|chr14 (9530895-9530691) | |
| 1-205, gnl|canFam2|chr26 (23211026-23211243) | |
| 1-205, gnl|dasNov1|scaffold_17729 (11215-11432) | |
| 1-205, gnl|echTel1|scaffold_322924 (81597-81402) | |
| 1-205, gnl|galGal2|chr15 (7118677-7118894) | |
| 1-205, gnl|hg17|chr22 (25219619-25219836) | |
| 1-205, gnl|Hg17|chr22 (25219827-25219623) | |
| 1-205, gnl|loxAfr1|scaffold_30011 (22063-22281) | |
| 1-205, gnl|mm7|chr5 (111520001-111519784) | |
| 1-205, gnl|Mm7|chr5 (111519791-111519995) | |
| 1-205, gnl|monDom2|scaffold_151 (1569106-1569325) | |
| 1-205, gnl|oryCun1|scaffold_202883 (81785-82003) | |
| 1-205, gnl|panTro1|chr23 (25302453-25302670) | |
| 1-205, gnl|rheMac2|chr10 (70337775-70337992) | |
| 1-205, gnl|rn3|chr19 (14319479-14319262) | |
| 1-205, gnl|xenTro1|scaffold_76 (99595-99812) | |
| 479-725, gnl|bosTau2|chr14 (9529838-9529592) | |
| 479-725, gnl|canFam2|chr26 (23209493-23209752) | |
| 479-725, gnl|dasNov1|scaffold_17729 (8964-9222) | |
| 479-725, gnl|echTel1|scaffold_155887 (705-958) | |
| 479-725, gnl|fr1|chrUn (1469173-1469426) | |
| 479-725, gnl|galGal2|chr15 (7117427-7117680) | |
| 479-725, gnl|hg17|chr22 (25216586-25216839) | |
| 479-725, gnl|Hg17|chr22 (25216838-25216592) | |
| 479-725, gnl|loxAfr1|scaffold_30011 (20162-20415) | |
| 479-725, gnl|mm7|chr5 (111521615-111521362) | |
| 479-725, gnl|Mm7|chr5 (111521361-111521607) | |
| 479-725, gnl|monDom2|scaffold_151 (1563598-1563851) | |
| 479-725, gnl|oryCun1|scaffold_202883 (79933-80186) | |
| 479-725, gnl|panTro1|chr23 (25298746-25298999) | |
| 479-725, gnl|rheMac2|chr10 (70334747-70335000) | |
| 479-725, gnl|rn3|chr19 (14321064-14320811) | |
| 479-725, gnl|tetNig1|chr12 (6036079-6036327) | |
| 479-725, gnl|xenTro1|scaffold_76 (97869-98116) | |
| 865-1010, gnl|bosTau2|chr6 (14845205-14845065) | |
| 865-1010, gnl|Hg17|chr22 (25214827-25214664) | |
| 865-1010, gnl|Mm7|chr5 (111522515-111522678) | |
| 1033-1584, gnl|bosTau2|chr14 (9527505-9526962) | |
| 1033-1584, gnl|Hg17|chr22 (25212889-25212124) | |
| 1033-1584, gnl|Mm7|chr5 (111523488-111524103) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-205, gnl|bosTau2|chr14 (9530895-9530691) | |
| 1-205, gnl|canFam2|chr26 (23211026-23211243) | |
| 1-205, gnl|dasNov1|scaffold_17729 (11215-11432) | |
| 1-205, gnl|echTel1|scaffold_322924 (81597-81402) | |
| 1-205, gnl|galGal2|chr15 (7118677-7118894) | |
| 1-205, gnl|hg17|chr22 (25219619-25219836) | |
| 1-205, gnl|Hg17|chr22 (25219827-25219623) | |
| 1-205, gnl|loxAfr1|scaffold_30011 (22063-22281) | |
| 1-205, gnl|mm7|chr5 (111520001-111519784) | |
| 1-205, gnl|Mm7|chr5 (111519791-111519995) | |
| 1-205, gnl|monDom2|scaffold_151 (1569106-1569325) | |
| 1-205, gnl|oryCun1|scaffold_202883 (81785-82003) | |
| 1-205, gnl|panTro1|chr23 (25302453-25302670) | |
| 1-205, gnl|rheMac2|chr10 (70337775-70337992) | |
| 1-205, gnl|rn3|chr19 (14319479-14319262) | |
| 1-205, gnl|xenTro1|scaffold_76 (99595-99812) | |
| 479-725, gnl|bosTau2|chr14 (9529838-9529592) | |
| 479-725, gnl|canFam2|chr26 (23209493-23209752) | |
| 479-725, gnl|dasNov1|scaffold_17729 (8964-9222) | |
| 479-725, gnl|echTel1|scaffold_155887 (705-958) | |
| 479-725, gnl|fr1|chrUn (1469173-1469426) | |
| 479-725, gnl|galGal2|chr15 (7117427-7117680) | |
| 479-725, gnl|hg17|chr22 (25216586-25216839) | |
| 479-725, gnl|Hg17|chr22 (25216838-25216592) | |
| 479-725, gnl|loxAfr1|scaffold_30011 (20162-20415) | |
| 479-725, gnl|mm7|chr5 (111521615-111521362) | |
| 479-725, gnl|Mm7|chr5 (111521361-111521607) | |
| 479-725, gnl|monDom2|scaffold_151 (1563598-1563851) | |
| 479-725, gnl|oryCun1|scaffold_202883 (79933-80186) | |
| 479-725, gnl|panTro1|chr23 (25298746-25298999) | |
| 479-725, gnl|rheMac2|chr10 (70334747-70335000) | |
| 479-725, gnl|rn3|chr19 (14321064-14320811) | |
| 479-725, gnl|tetNig1|chr12 (6036079-6036327) | |
| 479-725, gnl|xenTro1|scaffold_76 (97869-98116) | |
| 865-1010, gnl|bosTau2|chr6 (14845205-14845065) | |
| 865-1010, gnl|Hg17|chr22 (25214827-25214664) | |
| 865-1010, gnl|Mm7|chr5 (111522515-111522678) | |
| 1033-1584, gnl|bosTau2|chr14 (9527505-9526962) | |
| 1033-1584, gnl|Hg17|chr22 (25212889-25212124) | |
| 1033-1584, gnl|Mm7|chr5 (111523488-111524103) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| eli (0.303628) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| ill (0.175593) | |
| nje (0.16592) | |
| pty (0.142714) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (0.303628) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| ill (0.175593) | |
| nje (0.16592) | |
| pty (0.142714) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |